| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608664
Identifier: 86608664
GI number: 86608664
Start: 1226375
End: 1227001
Strand: Direct
Name: 86608664
Synonym: CYB_1188
Alternate gene names: NA
Gene position: 1226375-1227001 (Clockwise)
Preceding gene: 86608662
Following gene: 86608666
Centisome position: 40.25
GC content: 57.89
Gene sequence:
>627_bases GTGATCAAGCCTCGAGCAGCGACAGGTTCCGGCGCAAACATGATTCAACAGTTTCGAGAGCGGTACCCTATGGGCAGTTT GCTCACCGATCTGTTGCGTGTGGAAGAAGGGATCTACATTGTCAGAGCCCAGGTGGTGGTGAACAACACGGTTTTGGGCA GTGGCATGGCTGGCTCGAACACCGTCGAAGAGGCGGAAGATGCTGCCTTGAAGCGCGCCCTCCACCACGCAGGATTTGGT CGCCCCACTTCCTCTTTGAGTTTGGGCATGGATTCTGCTGCCGCCAGGGTGCCTTATCTGCCAACTCCTGAGTTGGCCAA CGGACACGCTCAGTCTTCCCCTGCTTCTCCAGCCCCCGAGTCGATAGGGATCCCTGCAAAGCCAAGTTCCCCAGAGCTGC CCGGTCTAAGTGAGCCGGCGGCCTATGGGGATGACCTATCGGACATCATTGCCCAAACGGATGTGGAGATGCAGCGCATT GGCTGGGGCCGCAAGGAAGGACAAGAGTTTTTGGAACGTCGCTTTCAGAAGAAATCTCGCCACCAACTCAGCGACGCCGA GCTGCGGGAGTTTTTGCGCTACCTAAAACAGCAGCCCTCCCGCCTCAGCAGCGAACCCCGCTTTTGA
Upstream 100 bases:
>100_bases CTTTGCCGATATTGATCCGACAATTTGAGAGGACAATTTGATTATTACTGATTATTAAGACATTGAGATCTGGATGTGAG GTTGACTTTCAAGCTAGCTT
Downstream 100 bases:
>100_bases AGTCTTCTCGGCCTTGCCGCCAAGATCTCGGGATCTGGAGATCTGGCAACTCCTATCTTCCAACTAGGGTTGTTCCGAGC CCGTTCAAGTAGCCTCTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MIKPRAATGSGANMIQQFRERYPMGSLLTDLLRVEEGIYIVRAQVVVNNTVLGSGMAGSNTVEEAEDAALKRALHHAGFG RPTSSLSLGMDSAAARVPYLPTPELANGHAQSSPASPAPESIGIPAKPSSPELPGLSEPAAYGDDLSDIIAQTDVEMQRI GWGRKEGQEFLERRFQKKSRHQLSDAELREFLRYLKQQPSRLSSEPRF
Sequences:
>Translated_208_residues MIKPRAATGSGANMIQQFRERYPMGSLLTDLLRVEEGIYIVRAQVVVNNTVLGSGMAGSNTVEEAEDAALKRALHHAGFG RPTSSLSLGMDSAAARVPYLPTPELANGHAQSSPASPAPESIGIPAKPSSPELPGLSEPAAYGDDLSDIIAQTDVEMQRI GWGRKEGQEFLERRFQKKSRHQLSDAELREFLRYLKQQPSRLSSEPRF >Mature_208_residues MIKPRAATGSGANMIQQFRERYPMGSLLTDLLRVEEGIYIVRAQVVVNNTVLGSGMAGSNTVEEAEDAALKRALHHAGFG RPTSSLSLGMDSAAARVPYLPTPELANGHAQSSPASPAPESIGIPAKPSSPELPGLSEPAAYGDDLSDIIAQTDVEMQRI GWGRKEGQEFLERRFQKKSRHQLSDAELREFLRYLKQQPSRLSSEPRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22685; Mature: 22685
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKPRAATGSGANMIQQFRERYPMGSLLTDLLRVEEGIYIVRAQVVVNNTVLGSGMAGSN CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEEHHHHCCHHCCCCCCCCC TVEEAEDAALKRALHHAGFGRPTSSLSLGMDSAAARVPYLPTPELANGHAQSSPASPAPE HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC SIGIPAKPSSPELPGLSEPAAYGDDLSDIIAQTDVEMQRIGWGRKEGQEFLERRFQKKSR CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHH HQLSDAELREFLRYLKQQPSRLSSEPRF HCCCHHHHHHHHHHHHHCHHHCCCCCCC >Mature Secondary Structure MIKPRAATGSGANMIQQFRERYPMGSLLTDLLRVEEGIYIVRAQVVVNNTVLGSGMAGSN CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEEHHHHCCHHCCCCCCCCC TVEEAEDAALKRALHHAGFGRPTSSLSLGMDSAAARVPYLPTPELANGHAQSSPASPAPE HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC SIGIPAKPSSPELPGLSEPAAYGDDLSDIIAQTDVEMQRIGWGRKEGQEFLERRFQKKSR CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHH HQLSDAELREFLRYLKQQPSRLSSEPRF HCCCHHHHHHHHHHHHHCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8467083; 8905231 [H]