Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608122

Identifier: 86608122

GI number: 86608122

Start: 644667

End: 645770

Strand: Reverse

Name: 86608122

Synonym: CYB_0633

Alternate gene names: NA

Gene position: 645770-644667 (Counterclockwise)

Preceding gene: 86608123

Following gene: 86608121

Centisome position: 21.2

GC content: 60.24

Gene sequence:

>1104_bases
TTGACCTTTCCGGTGCAGGCACGGGTGCTGCTGCGGGTAGGTATTGCCGTCAACAAGCCCCAGGTCACCGTCGGCAGCTC
TACCGGAGCCCGCCTATTGAATGCCCAGGGACAGCCGCTGGCAGAGGTTCAGGCCATGCAACCGCTGCAGGCCAGCCGTT
CGGGTTCAGCAGTCAGTTTGGCCGGCCAACAGGGAGAACGTCTTTACCTACAGCCCACCACCTCCGATGGGTTAGTGTTT
ATCGACCAGAATTGGTACCGTGGCTTGGTGGAGCTGATCCCTGGCGAGCGTGGGGTGATTGCCATCAACCAAGTTGGCTT
GGAGGACTACGTTTCCAGCGTGGTGGGCAGCGAGATGGGACACCGTTTTCCCATGGAGGCTCTTAAAGCCCAAGCCGTGG
CCTCCCGCACCTATGCCCTCTACCACCGCAGTCGCCGTTCCCAGCAGCCTTTTGACTTAGGAAACGGGATTGATTGGCAG
GTTTACAAGGGAGTGGCTGCCGAATCCAGCCGTACCCAAGCGGCTGCCCGTGAGACCGCCGGGCAGGTTCTCATCTACCA
GGGGCAGTTGATCAATGCGGTTTTCCACTCCTCTGCGGGGGGACATACAGATGATGCAGGCAACGTCTGGTTAGAATCGC
GGCCCTACTTACAGGGGGTGCCGGATTTCGATCAGCACTCACCGGTGTTTAGCTGGACGGCCACCGTTCCTGCCCAACAG
ATTCAGCAATTGGCTGCCGGGATCGGTGCCATTCGTTCTGTGGAGGTACTGCGCAGCTCCCCGTGGGGACGGGCAATCAC
GGTGCGCTTGACGGGATCCCAAGGGATCAGAGATCTCAATGCCGGCGATTTTCGTCGGGCTCTTGGGTTGCGCAGCACAA
AGATTGCCATTAGCCCGCGCGGGGAGGCCGCCACTACGGCCAGCCTGGCTCCTGTGGCAGGGACATTCCCAGCTTTCTTT
GAGATTCATGGGCGGGGCTACGGGCACGGGGTGGGCATGAGCCAGTGGGGAGCTGCCGCCCTGGCCAGCCAAAACTACTC
TTACCAACAGATCCTCAGCCACTACTACCGCAACACCAGTCTGGCAGTGGTGGAAGGACGTTAA

Upstream 100 bases:

>100_bases
TTTCACAGAGGATTGGTGTGTGACTATTGCCCTCTCCTTTTCTCCTCTCCCATCAGCTTGGCTTAGGAGTATTGCCCTTC
TGGTTTGGGCTTGGCTGTGC

Downstream 100 bases:

>100_bases
GGCTCAACTTCAAGGAGAAGCCAACAAAATCATCGATTGGTAGCAAAAGTAGCTGCAGTTTTTAAGAGCTTATGAGAAGC
AGCATTTTAATTGAACCGGA

Product: SpoIID/LytB domain-containing protein

Products: NA

Alternate protein names: H-34 [H]

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MTFPVQARVLLRVGIAVNKPQVTVGSSTGARLLNAQGQPLAEVQAMQPLQASRSGSAVSLAGQQGERLYLQPTTSDGLVF
IDQNWYRGLVELIPGERGVIAINQVGLEDYVSSVVGSEMGHRFPMEALKAQAVASRTYALYHRSRRSQQPFDLGNGIDWQ
VYKGVAAESSRTQAAARETAGQVLIYQGQLINAVFHSSAGGHTDDAGNVWLESRPYLQGVPDFDQHSPVFSWTATVPAQQ
IQQLAAGIGAIRSVEVLRSSPWGRAITVRLTGSQGIRDLNAGDFRRALGLRSTKIAISPRGEAATTASLAPVAGTFPAFF
EIHGRGYGHGVGMSQWGAAALASQNYSYQQILSHYYRNTSLAVVEGR

Sequences:

>Translated_367_residues
MTFPVQARVLLRVGIAVNKPQVTVGSSTGARLLNAQGQPLAEVQAMQPLQASRSGSAVSLAGQQGERLYLQPTTSDGLVF
IDQNWYRGLVELIPGERGVIAINQVGLEDYVSSVVGSEMGHRFPMEALKAQAVASRTYALYHRSRRSQQPFDLGNGIDWQ
VYKGVAAESSRTQAAARETAGQVLIYQGQLINAVFHSSAGGHTDDAGNVWLESRPYLQGVPDFDQHSPVFSWTATVPAQQ
IQQLAAGIGAIRSVEVLRSSPWGRAITVRLTGSQGIRDLNAGDFRRALGLRSTKIAISPRGEAATTASLAPVAGTFPAFF
EIHGRGYGHGVGMSQWGAAALASQNYSYQQILSHYYRNTSLAVVEGR
>Mature_366_residues
TFPVQARVLLRVGIAVNKPQVTVGSSTGARLLNAQGQPLAEVQAMQPLQASRSGSAVSLAGQQGERLYLQPTTSDGLVFI
DQNWYRGLVELIPGERGVIAINQVGLEDYVSSVVGSEMGHRFPMEALKAQAVASRTYALYHRSRRSQQPFDLGNGIDWQV
YKGVAAESSRTQAAARETAGQVLIYQGQLINAVFHSSAGGHTDDAGNVWLESRPYLQGVPDFDQHSPVFSWTATVPAQQI
QQLAAGIGAIRSVEVLRSSPWGRAITVRLTGSQGIRDLNAGDFRRALGLRSTKIAISPRGEAATTASLAPVAGTFPAFFE
IHGRGYGHGVGMSQWGAAALASQNYSYQQILSHYYRNTSLAVVEGR

Specific function: Might be involved in sporulation [H]

COG id: COG2385

COG function: function code D; Sporulation protein and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013486
- InterPro:   IPR013693 [H]

Pfam domain/function: PF08486 SpoIID [H]

EC number: NA

Molecular weight: Translated: 39450; Mature: 39319

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFPVQARVLLRVGIAVNKPQVTVGSSTGARLLNAQGQPLAEVQAMQPLQASRSGSAVSL
CCCCHHEEEEEEECEEECCCEEEECCCCCCCEECCCCCCHHHHHHHCCHHHCCCCCEEEE
AGQQGERLYLQPTTSDGLVFIDQNWYRGLVELIPGERGVIAINQVGLEDYVSSVVGSEMG
ECCCCCEEEEEECCCCCEEEEECHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHC
HRFPMEALKAQAVASRTYALYHRSRRSQQPFDLGNGIDWQVYKGVAAESSRTQAAARETA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHCC
GQVLIYQGQLINAVFHSSAGGHTDDAGNVWLESRPYLQGVPDFDQHSPVFSWTATVPAQQ
CCEEEEECHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCHHH
IQQLAAGIGAIRSVEVLRSSPWGRAITVRLTGSQGIRDLNAGDFRRALGLRSTKIAISPR
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEECCC
GEAATTASLAPVAGTFPAFFEIHGRGYGHGVGMSQWGAAALASQNYSYQQILSHYYRNTS
CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCHHHHHCCCCCHHHHHHHHHCCCE
LAVVEGR
EEEEECC
>Mature Secondary Structure 
TFPVQARVLLRVGIAVNKPQVTVGSSTGARLLNAQGQPLAEVQAMQPLQASRSGSAVSL
CCCHHEEEEEEECEEECCCEEEECCCCCCCEECCCCCCHHHHHHHCCHHHCCCCCEEEE
AGQQGERLYLQPTTSDGLVFIDQNWYRGLVELIPGERGVIAINQVGLEDYVSSVVGSEMG
ECCCCCEEEEEECCCCCEEEEECHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHC
HRFPMEALKAQAVASRTYALYHRSRRSQQPFDLGNGIDWQVYKGVAAESSRTQAAARETA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHCC
GQVLIYQGQLINAVFHSSAGGHTDDAGNVWLESRPYLQGVPDFDQHSPVFSWTATVPAQQ
CCEEEEECHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCHHH
IQQLAAGIGAIRSVEVLRSSPWGRAITVRLTGSQGIRDLNAGDFRRALGLRSTKIAISPR
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEECCC
GEAATTASLAPVAGTFPAFFEIHGRGYGHGVGMSQWGAAALASQNYSYQQILSHYYRNTS
CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCHHHHHCCCCCHHHHHHHHHCCCE
LAVVEGR
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA