| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608047
Identifier: 86608047
GI number: 86608047
Start: 564999
End: 566426
Strand: Reverse
Name: 86608047
Synonym: CYB_0555
Alternate gene names: NA
Gene position: 566426-564999 (Counterclockwise)
Preceding gene: 86608049
Following gene: 86608046
Centisome position: 18.59
GC content: 54.41
Gene sequence:
>1428_bases TTGGCAAGGAATCCACAGGGCCTTAGGGTGGAGATCAAAAAGGAACCACGACCTCTGGCAGGTGAACTCCGACGACGATT ACCAAGAAGAAATCAAAGTGCCATCTTCACCCTTAACGATTCAGCGATGAGCTTTCCTCTCAGTCATCTGTTGCAGCGAG GTCGGCAGTACCTTGCCCCTTTCTTAGGGCAAATCTTGTTGCCCAGCTTGGCCTTGACGGTGCTGCAGATCTTCATGATC CCGTTCTGGAGTGAGGAGAGCGACTATGCTTCTGCCTTCACAGCCCTGAGTCAGCGGGATAGCTATTGGTATCTCAGCAT TGTGCGGCGAGGGTACCAGTTTGTGGGCTTTGACAAGATTGCCTACGAGCAGAGCAACGTAGCTTTTTTCCCCGGCTATC CCCTGGCAGTGGCCGCAATCAGTCACCTTGTGGGAGTTGACCCTGAACTGGGGCTCTACCTCACCGCCCAGCTCTTTTGC TGGCTGATGTGGGTTTACCTTTTCCTGCTTTACCGCAGGTGGCAAATTCCCCCCCTCTGGCAAATTTTGGCCAGTTTGCT CATCTTCTTTTATCCCACCAGCTTTTACCTGGTCGTGGGCTACAGCGAATCTTTGTTTATGGCCAGCCTACTGGGTTTTC TCTACTGGTCAATTCACGGGGGCCGTCCCCTGCTGATGCTCCTGGCTGGGATCCACGGCTTGGTGATGAGTGCTACTCGG ATTGTCGGCTTGCCGGTGGCGCTGCTCCCTTTTTTGAATCTCCTGAAAGCGGGGGAGAGAACCCAAGCCCGCCGTTGGTT TTGGACGAGTATGGCAGCGAGCTTGGCTCTGTTGGGTGGCCTGGGCTTTTTTCTCTACTGTCAGCTCCGCTTCGGACGCT GGGATCTCTACCTGGAAATGCAGCGTTACTTTACCGGCGTGAAAGCCAATTATCAAGCTATTTTCCAAGCTCGCACATAT GTCCTTTCCGCCGAACGCTGGCAAAGCTTACTCTCTCTTTCTGCACCGATGAAAGACCCTGGGCTGTGGGCTGACGCTCT TAGCCAACTGTTTGTGTCTGCCACCCTGGGATCCCTGCTTGTTACAGGTTTAATGGATGCGGCAGGAGTTATGGCAGGTA GAAGCCAGTGTTGGCGGGAGCGGCTGGGATTTCATCTGGCTGCTTGGGCCATGTTTTACATTGCCCTGACGGGTACGAGC CCCTTGGGCCAGCGAAGCATGAGCCGCTATTGTCTGCCGGTTCACATCCTGCAGGTGTTGGCGTTGGTACATTGGGCCAA ACACACCGATTTCAGCTTCATCCCCCAAAGGGTGCTTGGCTATCTTGGCACTATCCTGAAGCTGGGCTACGGGCTTCTAG CTTTGATCTTCCTCGCCCTCAACCAAATCCTCACCTGGCGCTACGTCCACCATCTCTGGGTGGCTTGA
Upstream 100 bases:
>100_bases GGAAGTTTCTCGACCTGTTTTAGAGCCGTTTTATAATATTTACACTCTCACTCTTAGAGGGTGTCAATTGAACCAAGCGG TATCTCAAAAGTCCTAGACT
Downstream 100 bases:
>100_bases CTCCGCTTTCCTGAAGATAGGATGTGAGGGATCCCAACTTCTCACCGGCTGAGAGCTGTGGCCTTCTCTTCTCCCCGCAA GTCTCCCCGTCAAAACTCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 475; Mature: 474
Protein sequence:
>475_residues MARNPQGLRVEIKKEPRPLAGELRRRLPRRNQSAIFTLNDSAMSFPLSHLLQRGRQYLAPFLGQILLPSLALTVLQIFMI PFWSEESDYASAFTALSQRDSYWYLSIVRRGYQFVGFDKIAYEQSNVAFFPGYPLAVAAISHLVGVDPELGLYLTAQLFC WLMWVYLFLLYRRWQIPPLWQILASLLIFFYPTSFYLVVGYSESLFMASLLGFLYWSIHGGRPLLMLLAGIHGLVMSATR IVGLPVALLPFLNLLKAGERTQARRWFWTSMAASLALLGGLGFFLYCQLRFGRWDLYLEMQRYFTGVKANYQAIFQARTY VLSAERWQSLLSLSAPMKDPGLWADALSQLFVSATLGSLLVTGLMDAAGVMAGRSQCWRERLGFHLAAWAMFYIALTGTS PLGQRSMSRYCLPVHILQVLALVHWAKHTDFSFIPQRVLGYLGTILKLGYGLLALIFLALNQILTWRYVHHLWVA
Sequences:
>Translated_475_residues MARNPQGLRVEIKKEPRPLAGELRRRLPRRNQSAIFTLNDSAMSFPLSHLLQRGRQYLAPFLGQILLPSLALTVLQIFMI PFWSEESDYASAFTALSQRDSYWYLSIVRRGYQFVGFDKIAYEQSNVAFFPGYPLAVAAISHLVGVDPELGLYLTAQLFC WLMWVYLFLLYRRWQIPPLWQILASLLIFFYPTSFYLVVGYSESLFMASLLGFLYWSIHGGRPLLMLLAGIHGLVMSATR IVGLPVALLPFLNLLKAGERTQARRWFWTSMAASLALLGGLGFFLYCQLRFGRWDLYLEMQRYFTGVKANYQAIFQARTY VLSAERWQSLLSLSAPMKDPGLWADALSQLFVSATLGSLLVTGLMDAAGVMAGRSQCWRERLGFHLAAWAMFYIALTGTS PLGQRSMSRYCLPVHILQVLALVHWAKHTDFSFIPQRVLGYLGTILKLGYGLLALIFLALNQILTWRYVHHLWVA >Mature_474_residues ARNPQGLRVEIKKEPRPLAGELRRRLPRRNQSAIFTLNDSAMSFPLSHLLQRGRQYLAPFLGQILLPSLALTVLQIFMIP FWSEESDYASAFTALSQRDSYWYLSIVRRGYQFVGFDKIAYEQSNVAFFPGYPLAVAAISHLVGVDPELGLYLTAQLFCW LMWVYLFLLYRRWQIPPLWQILASLLIFFYPTSFYLVVGYSESLFMASLLGFLYWSIHGGRPLLMLLAGIHGLVMSATRI VGLPVALLPFLNLLKAGERTQARRWFWTSMAASLALLGGLGFFLYCQLRFGRWDLYLEMQRYFTGVKANYQAIFQARTYV LSAERWQSLLSLSAPMKDPGLWADALSQLFVSATLGSLLVTGLMDAAGVMAGRSQCWRERLGFHLAAWAMFYIALTGTSP LGQRSMSRYCLPVHILQVLALVHWAKHTDFSFIPQRVLGYLGTILKLGYGLLALIFLALNQILTWRYVHHLWVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54162; Mature: 54030
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARNPQGLRVEIKKEPRPLAGELRRRLPRRNQSAIFTLNDSAMSFPLSHLLQRGRQYLAP CCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHCCHHHHHHHHHHHHHH FLGQILLPSLALTVLQIFMIPFWSEESDYASAFTALSQRDSYWYLSIVRRGYQFVGFDKI HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEECCHHH AYEQSNVAFFPGYPLAVAAISHLVGVDPELGLYLTAQLFCWLMWVYLFLLYRRWQIPPLW HEECCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH QILASLLIFFYPTSFYLVVGYSESLFMASLLGFLYWSIHGGRPLLMLLAGIHGLVMSATR HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH IVGLPVALLPFLNLLKAGERTQARRWFWTSMAASLALLGGLGFFLYCQLRFGRWDLYLEM HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH QRYFTGVKANYQAIFQARTYVLSAERWQSLLSLSAPMKDPGLWADALSQLFVSATLGSLL HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH VTGLMDAAGVMAGRSQCWRERLGFHLAAWAMFYIALTGTSPLGQRSMSRYCLPVHILQVL HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH ALVHWAKHTDFSFIPQRVLGYLGTILKLGYGLLALIFLALNQILTWRYVHHLWVA HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ARNPQGLRVEIKKEPRPLAGELRRRLPRRNQSAIFTLNDSAMSFPLSHLLQRGRQYLAP CCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHCCHHHHHHHHHHHHHH FLGQILLPSLALTVLQIFMIPFWSEESDYASAFTALSQRDSYWYLSIVRRGYQFVGFDKI HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEECCHHH AYEQSNVAFFPGYPLAVAAISHLVGVDPELGLYLTAQLFCWLMWVYLFLLYRRWQIPPLW HEECCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH QILASLLIFFYPTSFYLVVGYSESLFMASLLGFLYWSIHGGRPLLMLLAGIHGLVMSATR HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH IVGLPVALLPFLNLLKAGERTQARRWFWTSMAASLALLGGLGFFLYCQLRFGRWDLYLEM HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH QRYFTGVKANYQAIFQARTYVLSAERWQSLLSLSAPMKDPGLWADALSQLFVSATLGSLL HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH VTGLMDAAGVMAGRSQCWRERLGFHLAAWAMFYIALTGTSPLGQRSMSRYCLPVHILQVL HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH ALVHWAKHTDFSFIPQRVLGYLGTILKLGYGLLALIFLALNQILTWRYVHHLWVA HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA