| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608046
Identifier: 86608046
GI number: 86608046
Start: 564489
End: 564941
Strand: Reverse
Name: 86608046
Synonym: CYB_0554
Alternate gene names: NA
Gene position: 564941-564489 (Counterclockwise)
Preceding gene: 86608047
Following gene: 86608045
Centisome position: 18.54
GC content: 57.62
Gene sequence:
>453_bases GTGGCCTTCTCTTCTCCCCGCAAGTCTCCCCGTCAAAACTCAGCCCCGCGTGTCGCTCAGACCCTTGAGCCCGCCAAAAT TTACCCCTGCCCGTGCTGCCATCAAGGTCAGTTGCGCCTGATCACCCTAACCGAAGCCTTTGGGTGTAGCCGTTGCCAGC ATATTTTTGCCATTACCCCCGACCGCCTGTACATCGAGCAACTGGCCGTTTCTTATCCCTATCGCAAAATGTGGTTCTGG AACGGCTACCAATGGGTGTTGCGGCGGGAAAACACCCTACAGGGATCCGCGCTCTTGGGCCTCACCCTCAGCTTGGGCAT TGTCTTGGCGGTTGGGTTCATCGGCGCAGTGCTCTTCCCAAACCAAACCCAGTTGCTCAGTTGGTTCATGATTCTCGGCT TGTTGCTAACGCTGCTGATGGTAACGGCGATCCTGCTGCTGCGGCGGCCCTGA
Upstream 100 bases:
>100_bases AATCCTCACCTGGCGCTACGTCCACCATCTCTGGGTGGCTTGACTCCGCTTTCCTGAAGATAGGATGTGAGGGATCCCAA CTTCTCACCGGCTGAGAGCT
Downstream 100 bases:
>100_bases GGTGAGTGAGATTTTCTCCAGCGACTGGTCTCCAGAATTGGCAGCCCCAGCACTTGTGGATCCAACCATTTCTTGTTAGC AGTGGTCTGGAGAACGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 150; Mature: 149
Protein sequence:
>150_residues MAFSSPRKSPRQNSAPRVAQTLEPAKIYPCPCCHQGQLRLITLTEAFGCSRCQHIFAITPDRLYIEQLAVSYPYRKMWFW NGYQWVLRRENTLQGSALLGLTLSLGIVLAVGFIGAVLFPNQTQLLSWFMILGLLLTLLMVTAILLLRRP
Sequences:
>Translated_150_residues MAFSSPRKSPRQNSAPRVAQTLEPAKIYPCPCCHQGQLRLITLTEAFGCSRCQHIFAITPDRLYIEQLAVSYPYRKMWFW NGYQWVLRRENTLQGSALLGLTLSLGIVLAVGFIGAVLFPNQTQLLSWFMILGLLLTLLMVTAILLLRRP >Mature_149_residues AFSSPRKSPRQNSAPRVAQTLEPAKIYPCPCCHQGQLRLITLTEAFGCSRCQHIFAITPDRLYIEQLAVSYPYRKMWFWN GYQWVLRRENTLQGSALLGLTLSLGIVLAVGFIGAVLFPNQTQLLSWFMILGLLLTLLMVTAILLLRRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17011; Mature: 16879
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFSSPRKSPRQNSAPRVAQTLEPAKIYPCPCCHQGQLRLITLTEAFGCSRCQHIFAITP CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEECHHCHHHHCEEEEECC DRLYIEQLAVSYPYRKMWFWNGYQWVLRRENTLQGSALLGLTLSLGIVLAVGFIGAVLFP CHHHHHHHHHHCCHHHEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC NQTQLLSWFMILGLLLTLLMVTAILLLRRP CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AFSSPRKSPRQNSAPRVAQTLEPAKIYPCPCCHQGQLRLITLTEAFGCSRCQHIFAITP CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEECHHCHHHHCEEEEECC DRLYIEQLAVSYPYRKMWFWNGYQWVLRRENTLQGSALLGLTLSLGIVLAVGFIGAVLFP CHHHHHHHHHHCCHHHEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC NQTQLLSWFMILGLLLTLLMVTAILLLRRP CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA