| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608044
Identifier: 86608044
GI number: 86608044
Start: 562273
End: 562914
Strand: Reverse
Name: 86608044
Synonym: CYB_0552
Alternate gene names: NA
Gene position: 562914-562273 (Counterclockwise)
Preceding gene: 86608045
Following gene: 86608043
Centisome position: 18.48
GC content: 60.59
Gene sequence:
>642_bases TTGGGGATCGACCTTCGCAGTTACGTGTTTTTGGATCGGCTGCAACCCCAGTATGCTGCTTATCTGGGCACAGTAGCCTA CGGCTTTTTGCCCCTGCCTGGGGACACTTCTTTGTGGGTCGAGATTTCCCCCGGCATCGAGATCAACCGCGTTATGGATA TTGCCCTGAAGGCCACCTCGGTGAGGCCGGGGCTGCAGGTGGTGGAACGCCTCTACGGCCTTCTGGAAGTACACTCCAGC AACCAAGGGGATACCCGCACCGCCGGACGGGCGATTCTGGCTGCCTTGGGGGTGAGCGAACAGGAGCGCCTCAAGCCCCG CATCATCTCCAGCCAGATCATCCGCAACATCGATCCCCACCAAACCCAGTTGATTAACCGTTCCCGCCGTGGCCAAATGC TCCTGGCCGGCCAAACCCTCTACATCCTGGAGGTGCAACCGGCAGGCTATGCCCCCCTGGCTGCCAACGAGGCAGAAAAA TCTGCCCAGATCAACATCCTGGAGGTGATGCCTTTCGGTAGCTTTGGCCGCGTGTACTTGGGAGGGGAAGAGCGAGATAT TCTGGCCGCCTGCCGCGCTGCCGAAGCCGTCTTGGCGGGGGTTTCCGGTCGGGAGCCCCTCTTGTTGCCTGAGGAGGTGT AG
Upstream 100 bases:
>100_bases GCCGGTCTGCCCAAGATCCAAGAGCTGGGATGAGGCTGGAGAATGAGAATGTAGATCGCCATCAGCTCAACATCCAACTG AGGCCAAAGGGAGGACTTTT
Downstream 100 bases:
>100_bases CCAATGGCAGACTCCGATCCCAAGCCAAGATCGCCCCTGTCGCAACGCCGGGATCCCTCTTCAGCAGAGCAGGTGAGGCT GTTGACGGAGCTGGCCGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: Bacterial Microcompartments Protein Family; Microcompartments Protein Family Protein
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MGIDLRSYVFLDRLQPQYAAYLGTVAYGFLPLPGDTSLWVEISPGIEINRVMDIALKATSVRPGLQVVERLYGLLEVHSS NQGDTRTAGRAILAALGVSEQERLKPRIISSQIIRNIDPHQTQLINRSRRGQMLLAGQTLYILEVQPAGYAPLAANEAEK SAQINILEVMPFGSFGRVYLGGEERDILAACRAAEAVLAGVSGREPLLLPEEV
Sequences:
>Translated_213_residues MGIDLRSYVFLDRLQPQYAAYLGTVAYGFLPLPGDTSLWVEISPGIEINRVMDIALKATSVRPGLQVVERLYGLLEVHSS NQGDTRTAGRAILAALGVSEQERLKPRIISSQIIRNIDPHQTQLINRSRRGQMLLAGQTLYILEVQPAGYAPLAANEAEK SAQINILEVMPFGSFGRVYLGGEERDILAACRAAEAVLAGVSGREPLLLPEEV >Mature_212_residues GIDLRSYVFLDRLQPQYAAYLGTVAYGFLPLPGDTSLWVEISPGIEINRVMDIALKATSVRPGLQVVERLYGLLEVHSSN QGDTRTAGRAILAALGVSEQERLKPRIISSQIIRNIDPHQTQLINRSRRGQMLLAGQTLYILEVQPAGYAPLAANEAEKS AQINILEVMPFGSFGRVYLGGEERDILAACRAAEAVLAGVSGREPLLLPEEV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23253; Mature: 23122
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIDLRSYVFLDRLQPQYAAYLGTVAYGFLPLPGDTSLWVEISPGIEINRVMDIALKATS CCCCHHHHHHHHHCCHHHHHHHHHHHHCCEECCCCCEEEEEECCCCEEHHHHEEHHEECC VRPGLQVVERLYGLLEVHSSNQGDTRTAGRAILAALGVSEQERLKPRIISSQIIRNIDPH CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHH QTQLINRSRRGQMLLAGQTLYILEVQPAGYAPLAANEAEKSAQINILEVMPFGSFGRVYL HHHHHHHCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEE GGEERDILAACRAAEAVLAGVSGREPLLLPEEV CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure GIDLRSYVFLDRLQPQYAAYLGTVAYGFLPLPGDTSLWVEISPGIEINRVMDIALKATS CCCHHHHHHHHHCCHHHHHHHHHHHHCCEECCCCCEEEEEECCCCEEHHHHEEHHEECC VRPGLQVVERLYGLLEVHSSNQGDTRTAGRAILAALGVSEQERLKPRIISSQIIRNIDPH CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHH QTQLINRSRRGQMLLAGQTLYILEVQPAGYAPLAANEAEKSAQINILEVMPFGSFGRVYL HHHHHHHCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEE GGEERDILAACRAAEAVLAGVSGREPLLLPEEV CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA