| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is tgt [H]
Identifier: 86608004
GI number: 86608004
Start: 524190
End: 525287
Strand: Direct
Name: tgt [H]
Synonym: CYB_0511
Alternate gene names: 86608004
Gene position: 524190-525287 (Clockwise)
Preceding gene: 86608003
Following gene: 86608005
Centisome position: 17.21
GC content: 60.29
Gene sequence:
>1098_bases TTGGCCGACTTTACCTTTACTTGTGAGGGCACCTGCCCCCATACCCAAGCGCGGGCAGGATACTTCGTCACCCCCCACGG CGGGATCCCAACCCCTTGCTTTATGCCGGTGGGAACTTTGGCCAACGTGAAAACCCTCACCCCGGCCCAGCTCAAGGAGA CAGGTGCCCACATCATCCTCAGCAACACCTATCATCTCCACCTGCAACCTGGCGAAAGCATCATTCAAGCGGCAGGGGGG CTACACCGCTTTATGGGCTGGTCGGGCCCCATCCTTACCGACTCAGGGGGCTTCCAGGTCTTCAGCCTCAGCGCCATTCG CCAAATCAACGAGGAGGGAGTGACGTTCCGCTCTCCTCTCGATGGCCGCATCATTCACTTCACCCCAGAGCTATCCATCC AGATTCAAAATGCCTTGGGTGCCGATGTGATCATGGCCTTCGACGAGTGCCCGCCCTACCCTGCCAGCCCTGAGGAAGTG GAAGCAGCAGTGCGGCGAACCACCCAGTGGCTGAAACGGTGCGTGAAAGCCCATCGCCGCTCAGATCAGGCTTTGTTTGG CATTGTGCAGGGGGGAGTTTACCCTGAGCTGCGCCGGCGGGCGGTGGAAGAGGTCTGTCGGTTGGATCTGCCGGGCTATG CCATTGGCGGGGTGAGTGTGGGGGAGCCGGTCGAGTTTATGCACGCCGTTGTGCGGCAAACAGCCCCTCTACTGCCGGCA GATCGCCCCCGTTATCTCATGGGGGTGGGCACCTATGCCGAGATGCGCGCTGCTGTGGCCGCCGGAGTGGATTTGTTTGA CTGCGTGATCCCCACCCGCTATGCCCGCCATGGCACGGTGATCAGCCGGGGCAAACGCTGGAACATCAAAAATGCGGAAC ACCGCCGCAGCTTGGATCCCATCGATCCCGACTGTCCCTGCTACACCTGCCGCCACTTTAGCCGCGCCTACTTGTGCCAC CTCATCCGCGCCCAGGAGATCCTGGGCTATACCCTGCTTTCTATCCACAACATCACGGAGCTGATGCGCTACACCCAAAA GATGCGTCAGGCCATCTTGGAAGGCAAGTTTCACGAGAACTGGGATCCCTGGAGCTAA
Upstream 100 bases:
>100_bases AGGGGATCCCTGTCAAGGCTGGCAAAAGGGATCCCTTGCCGGCGGCTCTATCTGTGCTAAGCTCTGCTGCGCACCAGATG AAAGCTGATCAACGCTGACC
Downstream 100 bases:
>100_bases GCCGGTCAGGAGATTTCTCTGGAAATATCCGATCCATCCTAGTTCACTAGATACTCCAATATCCCGTGTATATACTTATA CTTAAATTATCCCATGTAGC
Product: queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 365; Mature: 364
Protein sequence:
>365_residues MADFTFTCEGTCPHTQARAGYFVTPHGGIPTPCFMPVGTLANVKTLTPAQLKETGAHIILSNTYHLHLQPGESIIQAAGG LHRFMGWSGPILTDSGGFQVFSLSAIRQINEEGVTFRSPLDGRIIHFTPELSIQIQNALGADVIMAFDECPPYPASPEEV EAAVRRTTQWLKRCVKAHRRSDQALFGIVQGGVYPELRRRAVEEVCRLDLPGYAIGGVSVGEPVEFMHAVVRQTAPLLPA DRPRYLMGVGTYAEMRAAVAAGVDLFDCVIPTRYARHGTVISRGKRWNIKNAEHRRSLDPIDPDCPCYTCRHFSRAYLCH LIRAQEILGYTLLSIHNITELMRYTQKMRQAILEGKFHENWDPWS
Sequences:
>Translated_365_residues MADFTFTCEGTCPHTQARAGYFVTPHGGIPTPCFMPVGTLANVKTLTPAQLKETGAHIILSNTYHLHLQPGESIIQAAGG LHRFMGWSGPILTDSGGFQVFSLSAIRQINEEGVTFRSPLDGRIIHFTPELSIQIQNALGADVIMAFDECPPYPASPEEV EAAVRRTTQWLKRCVKAHRRSDQALFGIVQGGVYPELRRRAVEEVCRLDLPGYAIGGVSVGEPVEFMHAVVRQTAPLLPA DRPRYLMGVGTYAEMRAAVAAGVDLFDCVIPTRYARHGTVISRGKRWNIKNAEHRRSLDPIDPDCPCYTCRHFSRAYLCH LIRAQEILGYTLLSIHNITELMRYTQKMRQAILEGKFHENWDPWS >Mature_364_residues ADFTFTCEGTCPHTQARAGYFVTPHGGIPTPCFMPVGTLANVKTLTPAQLKETGAHIILSNTYHLHLQPGESIIQAAGGL HRFMGWSGPILTDSGGFQVFSLSAIRQINEEGVTFRSPLDGRIIHFTPELSIQIQNALGADVIMAFDECPPYPASPEEVE AAVRRTTQWLKRCVKAHRRSDQALFGIVQGGVYPELRRRAVEEVCRLDLPGYAIGGVSVGEPVEFMHAVVRQTAPLLPAD RPRYLMGVGTYAEMRAAVAAGVDLFDCVIPTRYARHGTVISRGKRWNIKNAEHRRSLDPIDPDCPCYTCRHFSRAYLCHL IRAQEILGYTLLSIHNITELMRYTQKMRQAILEGKFHENWDPWS
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=347, Percent_Identity=44.6685878962536, Blast_Score=312, Evalue=4e-85, Organism=Escherichia coli, GI1786607, Length=345, Percent_Identity=48.4057971014493, Blast_Score=346, Evalue=1e-96, Organism=Caenorhabditis elegans, GI17544680, Length=337, Percent_Identity=43.026706231454, Blast_Score=278, Evalue=2e-75, Organism=Drosophila melanogaster, GI19920510, Length=355, Percent_Identity=44.7887323943662, Blast_Score=317, Evalue=6e-87, Organism=Drosophila melanogaster, GI21355311, Length=222, Percent_Identity=24.7747747747748, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 40711; Mature: 40580
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADFTFTCEGTCPHTQARAGYFVTPHGGIPTPCFMPVGTLANVKTLTPAQLKETGAHIIL CCCEEEEECCCCCCCCCCCCEEECCCCCCCCCHHCCCCCCCCCCCCCHHHHHHCCCEEEE SNTYHLHLQPGESIIQAAGGLHRFMGWSGPILTDSGGFQVFSLSAIRQINEEGVTFRSPL ECEEEEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEHHHHHHHHHCCCEEECCC DGRIIHFTPELSIQIQNALGADVIMAFDECPPYPASPEEVEAAVRRTTQWLKRCVKAHRR CCEEEEECCCEEEEECCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC SDQALFGIVQGGVYPELRRRAVEEVCRLDLPGYAIGGVSVGEPVEFMHAVVRQTAPLLPA CCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCC DRPRYLMGVGTYAEMRAAVAAGVDLFDCVIPTRYARHGTVISRGKRWNIKNAEHRRSLDP CCCCEEEECCHHHHHHHHHHHCCHHHHHHHCHHHHHCCCEEECCCCCCCCCHHHHCCCCC IDPDCPCYTCRHFSRAYLCHLIRAQEILGYTLLSIHNITELMRYTQKMRQAILEGKFHEN CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC WDPWS CCCCC >Mature Secondary Structure ADFTFTCEGTCPHTQARAGYFVTPHGGIPTPCFMPVGTLANVKTLTPAQLKETGAHIIL CCEEEEECCCCCCCCCCCCEEECCCCCCCCCHHCCCCCCCCCCCCCHHHHHHCCCEEEE SNTYHLHLQPGESIIQAAGGLHRFMGWSGPILTDSGGFQVFSLSAIRQINEEGVTFRSPL ECEEEEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEHHHHHHHHHCCCEEECCC DGRIIHFTPELSIQIQNALGADVIMAFDECPPYPASPEEVEAAVRRTTQWLKRCVKAHRR CCEEEEECCCEEEEECCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC SDQALFGIVQGGVYPELRRRAVEEVCRLDLPGYAIGGVSVGEPVEFMHAVVRQTAPLLPA CCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCC DRPRYLMGVGTYAEMRAAVAAGVDLFDCVIPTRYARHGTVISRGKRWNIKNAEHRRSLDP CCCCEEEECCHHHHHHHHHHHCCHHHHHHHCHHHHHCCCEEECCCCCCCCCHHHHCCCCC IDPDCPCYTCRHFSRAYLCHLIRAQEILGYTLLSIHNITELMRYTQKMRQAILEGKFHEN CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC WDPWS CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]