| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607968
Identifier: 86607968
GI number: 86607968
Start: 483699
End: 484709
Strand: Direct
Name: 86607968
Synonym: CYB_0474
Alternate gene names: NA
Gene position: 483699-484709 (Clockwise)
Preceding gene: 86607967
Following gene: 86607970
Centisome position: 15.88
GC content: 46.19
Gene sequence:
>1011_bases TTGGCTAGGAGCCAAGCAATTCACCTAAAGGCTTGCAGCTCCACCATGGCCAGAGTTTGCATAATTACCACTGTTCGGGA TCCAGGCGTGTGCTTGGAGTCGTTCATTCGCTATCACCTTGCCCTTGGAATTGCCCATATTTATATCTTCTTTGACGATC TAGAGGATCCCGCTATTCAGGTGGCACTTCAGTTTTCCGATGTAACGGCTATTCCCAACGATGAAGCTTTGCAAGTCCAA CAAGCATTGGGGAATGTTCTCTATCCAAAATATGGCCCTCATGTTGGCTATGAGGTCATGGCTCGTCAGATCCTTAACGT AGAAACTGCTATACAACTTGCCCTGGATCAGGGCATGGACTGGATTCTTCATATTGACGGAGACGAGCTTTTTTATCCTG GCCAGACAACGGCTCCAAATTGGTTTGATCGAGTAAGCGACGACATATTTCAAGTTACGTTTCTAAACCACGAAGCAGCT CCCGAAGCGTTTGAGATCGAAGACTACTTCCGCGAGGTCACTTTATTTAAGAGAAATCCTGCTATTTTGGATCCCGGATT CTATACCCAGTTTCAGAAGATCTCTAGTAAGAGTCAATACTTTTTGGCTTACCAGAATGGAAAGTCAGCAGCTCGGATCT ATCCCTCTCTTCTGCCTAACAGCGTACATAGCTTTGATATTCCAGGGGATCATACTCTAGTAACGTCGTCTCCCTCTATT TTGCACTACTTGAACTGCGGATTCCAGAACTACTATAAAAAATACGCCCAACCGGGAAACTTTCCCGACTACTGGTGGCG CTCCAAGTCTAATCCTATTCGGGTGCCTTTTCACTTAACCTCACGGGATGCTTACTGCTCGGGAGATAGAACTCGCATGG AAGCTCTCTATCAGGAGTTTATACTTTACAACAATCCTGAAGCCAGTCAAAGCCTCATGGAAAACGGCATTCTCACACGC ATTTGCTACCCTTCCCAGCTACTGTCATCTCTCTCTACCTCACCGGTTTAG
Upstream 100 bases:
>100_bases ATAACAGCATCGTCTTCTTCTCCAGCAGTTGCCTACATGAAATCCTGCCGGTATTTAGCCCTAGCCAAGCCTTTGCCGAT AGCCGCTTCACTATCAATAC
Downstream 100 bases:
>100_bases TCTGAGCTCTTATCCGCTCTCCAGTGCGAGACTAGTCAGGGTAAGAAAAAGGCTCCCTATAGGGAGCCATGGAGTACTTG AAGTGAAAAGAGAAATTATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MARSQAIHLKACSSTMARVCIITTVRDPGVCLESFIRYHLALGIAHIYIFFDDLEDPAIQVALQFSDVTAIPNDEALQVQ QALGNVLYPKYGPHVGYEVMARQILNVETAIQLALDQGMDWILHIDGDELFYPGQTTAPNWFDRVSDDIFQVTFLNHEAA PEAFEIEDYFREVTLFKRNPAILDPGFYTQFQKISSKSQYFLAYQNGKSAARIYPSLLPNSVHSFDIPGDHTLVTSSPSI LHYLNCGFQNYYKKYAQPGNFPDYWWRSKSNPIRVPFHLTSRDAYCSGDRTRMEALYQEFILYNNPEASQSLMENGILTR ICYPSQLLSSLSTSPV
Sequences:
>Translated_336_residues MARSQAIHLKACSSTMARVCIITTVRDPGVCLESFIRYHLALGIAHIYIFFDDLEDPAIQVALQFSDVTAIPNDEALQVQ QALGNVLYPKYGPHVGYEVMARQILNVETAIQLALDQGMDWILHIDGDELFYPGQTTAPNWFDRVSDDIFQVTFLNHEAA PEAFEIEDYFREVTLFKRNPAILDPGFYTQFQKISSKSQYFLAYQNGKSAARIYPSLLPNSVHSFDIPGDHTLVTSSPSI LHYLNCGFQNYYKKYAQPGNFPDYWWRSKSNPIRVPFHLTSRDAYCSGDRTRMEALYQEFILYNNPEASQSLMENGILTR ICYPSQLLSSLSTSPV >Mature_335_residues ARSQAIHLKACSSTMARVCIITTVRDPGVCLESFIRYHLALGIAHIYIFFDDLEDPAIQVALQFSDVTAIPNDEALQVQQ ALGNVLYPKYGPHVGYEVMARQILNVETAIQLALDQGMDWILHIDGDELFYPGQTTAPNWFDRVSDDIFQVTFLNHEAAP EAFEIEDYFREVTLFKRNPAILDPGFYTQFQKISSKSQYFLAYQNGKSAARIYPSLLPNSVHSFDIPGDHTLVTSSPSIL HYLNCGFQNYYKKYAQPGNFPDYWWRSKSNPIRVPFHLTSRDAYCSGDRTRMEALYQEFILYNNPEASQSLMENGILTRI CYPSQLLSSLSTSPV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38231; Mature: 38099
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARSQAIHLKACSSTMARVCIITTVRDPGVCLESFIRYHLALGIAHIYIFFDDLEDPAIQ CCCCCEEEEEHHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHHHHEEEEEEECCCCCEEE VALQFSDVTAIPNDEALQVQQALGNVLYPKYGPHVGYEVMARQILNVETAIQLALDQGMD EEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE WILHIDGDELFYPGQTTAPNWFDRVSDDIFQVTFLNHEAAPEAFEIEDYFREVTLFKRNP EEEEECCCCEECCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHEECCC AILDPGFYTQFQKISSKSQYFLAYQNGKSAARIYPSLLPNSVHSFDIPGDHTLVTSSPSI CEECCCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC LHYLNCGFQNYYKKYAQPGNFPDYWWRSKSNPIRVPFHLTSRDAYCSGDRTRMEALYQEF HHHHHCCHHHHHHHHCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH ILYNNPEASQSLMENGILTRICYPSQLLSSLSTSPV HHCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCC >Mature Secondary Structure ARSQAIHLKACSSTMARVCIITTVRDPGVCLESFIRYHLALGIAHIYIFFDDLEDPAIQ CCCCEEEEEHHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHHHHEEEEEEECCCCCEEE VALQFSDVTAIPNDEALQVQQALGNVLYPKYGPHVGYEVMARQILNVETAIQLALDQGMD EEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE WILHIDGDELFYPGQTTAPNWFDRVSDDIFQVTFLNHEAAPEAFEIEDYFREVTLFKRNP EEEEECCCCEECCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHEECCC AILDPGFYTQFQKISSKSQYFLAYQNGKSAARIYPSLLPNSVHSFDIPGDHTLVTSSPSI CEECCCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC LHYLNCGFQNYYKKYAQPGNFPDYWWRSKSNPIRVPFHLTSRDAYCSGDRTRMEALYQEF HHHHHCCHHHHHHHHCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH ILYNNPEASQSLMENGILTRICYPSQLLSSLSTSPV HHCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA