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The map label for this gene is ydcM [C]

Identifier: 86607966

GI number: 86607966

Start: 481589

End: 482800

Strand: Direct

Name: ydcM [C]

Synonym: CYB_0472

Alternate gene names: 86607966

Gene position: 481589-482800 (Clockwise)

Preceding gene: 86607965

Following gene: 86607967

Centisome position: 15.81

GC content: 56.85

Gene sequence:

>1212_bases
ATGACCCAAGTCCTGACCATATCCTGCAAGCTCAAGGTGTCCCCGTCGCAAGCCGCCAAATTGGACGCGACTTTGGAGGC
TTTTGGCCAAGCCTTGAATTGGGTCAACCAGAACACGCCGGAGAAGATCGTCAACGCGGTCAAGCTGCAATCCCTTTGCT
ACTACGAGATTCGAGCCCGGTTTGGCTTGTCCAGTAACTTGGCTCAACAGGTGTGCAGACGGGTAGCGGGTTCCCGCAAA
GTGGCTAAGCAGAAAAAGCGTCCCGTCAAGGAGTTTAAGAGCGGCTTTGTTACCTACGACGCTCGTATCTTTTCGTTCCG
CGAGAAAGACTGGACGGTGTCGCTGACCACGGTGGAGGGTCGGGAGCGCTTTGAGCTGGCGATTGGCCGCTACCAGAGAG
AACGGCTGGCGGACTCCAATCCCAAATCTGCCACTCTGGTCAAGCGTAAAGACGGCTCCTACTCCATTCAAATCTGTGTG
GAAGCGGAGCCATCCCCACCGCAACGCACGGGCAGAGTGCTGGGGGTGGACTTGGGAAGGACAGATATTGCCCATACGTC
AGACGGGGACAATTGGAATGGACAGCAGTTGAACAGAGTCCGCGACCGCTACTCCCGGTTGAGGGCGGTACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCCGTCAACTGCTGCAACGGCTGTCTGGCAAGGAGAGGCGCTTT
CAAACGTGGGTCAATCATCGCATCTCTAAAGCTATTGTCTCTAGGGCAAAGGCTACCAACAGCGCTATCGCCCTGGAAGA
CCTGACAGGGATCCGGGAAAGAGTCAATCAACAGCCCCGCAGCAAAACCGAGCGGCGCAGGGCCAACAGTTGGGCGTTTT
ATCAACTCCGTCAGTTTCTGGAATACAAGGCGAGGGCTGCAGGGGTTTCTCTGATTCTTGTGCCGCCTGCTTACACGTCG
CAGACCTGTCACCGGTGCTTACACATCCACCCTGAGCAGGGCAAGTCCTACCGCAGTGGCAAGTCGTTCAAGTGTGGGCA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTGGGGGCTGTCGTAAACCAGCCTAGAG
GTTCGGGCCTGTTTTGTTCTCTGGTAGAGCAGGGCAGGCTCAGGGCTACTGAAAGCCCGCTCCGTACCGCTTTAGCGGTC
GGAGTCGGGTAG

Upstream 100 bases:

>100_bases
CGGACTACCGTACCTGTCTGCTTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAAT
GCGGAAGTTATGATAGAACC

Downstream 100 bases:

>100_bases
TTTACTCTTTGCTACTGCGGGATTACTTGGCCGACTCAGCCCTATACTTGGTCAACCATTGCCGCTACGGAGCCATAGCC
CAAGCCAACCTAGATTTGAT

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MTQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRK
VAKQKKRPVKEFKSGFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLADSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTGRVLGVDLGRTDIAHTSDGDNWNGQQLNRVRDRYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
QTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKARAAGVSLILVPPAYTS
QTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQGRLRATESPLRTALAV
GVG

Sequences:

>Translated_403_residues
MTQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRK
VAKQKKRPVKEFKSGFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLADSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTGRVLGVDLGRTDIAHTSDGDNWNGQQLNRVRDRYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
QTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKARAAGVSLILVPPAYTS
QTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQGRLRATESPLRTALAV
GVG
>Mature_402_residues
TQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRKV
AKQKKRPVKEFKSGFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLADSNPKSATLVKRKDGSYSIQICVE
AEPSPPQRTGRVLGVDLGRTDIAHTSDGDNWNGQQLNRVRDRYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRFQ
TWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKARAAGVSLILVPPAYTSQ
TCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQGRLRATESPLRTALAVG
VG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=260, Percent_Identity=27.6923076923077, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45320; Mature: 45189

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCEEEEHEEEEEECCCEEEEEEEECC
RERFELAIGRYQRERLADSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCCHHHCCCEEEEECCC
TDIAHTSDGDNWNGQQLNRVRDRYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARAAGVSLILVPPAYTSQTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSGLFCSLVEQGRLRATESPLRTALAVGVG
HHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCEEEEHEEEEEECCCEEEEEEEECC
RERFELAIGRYQRERLADSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCCHHHCCCEEEEECCC
TDIAHTSDGDNWNGQQLNRVRDRYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARAAGVSLILVPPAYTSQTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSGLFCSLVEQGRLRATESPLRTALAVGVG
HHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]