| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607956
Identifier: 86607956
GI number: 86607956
Start: 466819
End: 468018
Strand: Direct
Name: 86607956
Synonym: CYB_0462
Alternate gene names: NA
Gene position: 466819-468018 (Clockwise)
Preceding gene: 86607955
Following gene: 86607960
Centisome position: 15.32
GC content: 56.92
Gene sequence:
>1200_bases GTGTTGTGGAAACTAAGCCGAAAACTAGTTCCACTACTTCAACAGACGGGAAGCCTGGGGATCTTCTCCTCAGAGCAGGA ATCAAGGCGCCAGGTTCGTTTTCTGCGCCGCTTCCGCTTCACCCGTATTGGGGGGCGGTTTGTCGGGATCGCCCTGTTGG TAAGTATTGCTGCTTTCAACACCGGCAACAATCCCCTGTACTTGTTGCTGGGGATGCTGCTCAGCCTCATCCTCATCAGC GGTACCCTCTCTGATATCACCCTCAAAGATCTGGAGGTCAGCCGGCAGTTGCCTAGCCGCATTTTCGCCGGCCAGCCTGT CTTGGTGGGTCTCACGCTGGTCAATCGCAAACGGCGCCTGCCCAGCTTCTCGTTGCAGGTGAGCGAACGCATTGAGGGGC TGAGGCGGGAAGATTGGCCTTCCAGCTATGTTTTGCGGGTGGATCCCGGTGCCAAGGTGGACACTTTTTATCAGCAGACT TTTTCAAGGCGGGGAGCCTGGCAGTTGCAAGGTTTTGAAGTTGCCACCAGCTTCCCATTTGAACTCTTCCGCAAGGCGGT GGCAATTAGGGATCCCCAAACGGTGATCGTGTTTCCGCGGCTCGCCCCGGTTCAAGGATTGGCGCTGTGGGATCAGCTCA GCAGCGGCAACCAATTGCGCCCCCAACCCGGTCGAGAGGGAGACTACCTGAGCTTACGGCCCTACCGCCCCCAGGACGAT GTGCGCTCTGTCCATTGGAAGATCTCGGCCAAACGGGATCAACTAATCGTGCGGGAGTTGGAGCGTCCACGAGCCCAGGC CATCACCCTCTGTTTTGAAAACCGCTGGCAGCCCCAGAAAGAGAGGCCCGAGATCCATCGAGACAAGTTGGAGCGAGCTG TAGAGCGCTGTGCCGGGATCCTCTTCTACTTGATGCGAGAAGGTTACCCGGTAGCACTTGTTACGTTACAAGAGCGGACT CCTTTTGGGTCAGACCTGGCCCATCAAGATCACCTGCTGACCGTGTTGGCACGACTTACTTTTGTCGGGGATCCCCAGCT CAGCCCTCCACTGGAAAGAGAACCTGATCCCTCTGTCAAGTTTGACCTCACCCCTCAAGATCGCTGTGTGCTGCTGGCCC ATCCCGACCAGGATGGAAAATCTGCCCCGGCCCATCTCATCCACACGGGATCGCTGTTGCAATTTATCCCAATTGAGTGA
Upstream 100 bases:
>100_bases GTTATGGTGATTTCAAATTACACTGAAGCAGCTTGTAGATTCCAGACCTCTTTCTCCTTTGGAGAGGGGCCGGGGATGAA GGAGTGATGAGGGGACTGCG
Downstream 100 bases:
>100_bases GCTTCAGGCCCATTTTGATAGCAGGATCCATCTGAGATTGTTTGGAAAGCTTGGCTTGCAGATCCTTGCAAAGCTTTAGG TTGAACTGCTGGAGAAGTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MLWKLSRKLVPLLQQTGSLGIFSSEQESRRQVRFLRRFRFTRIGGRFVGIALLVSIAAFNTGNNPLYLLLGMLLSLILIS GTLSDITLKDLEVSRQLPSRIFAGQPVLVGLTLVNRKRRLPSFSLQVSERIEGLRREDWPSSYVLRVDPGAKVDTFYQQT FSRRGAWQLQGFEVATSFPFELFRKAVAIRDPQTVIVFPRLAPVQGLALWDQLSSGNQLRPQPGREGDYLSLRPYRPQDD VRSVHWKISAKRDQLIVRELERPRAQAITLCFENRWQPQKERPEIHRDKLERAVERCAGILFYLMREGYPVALVTLQERT PFGSDLAHQDHLLTVLARLTFVGDPQLSPPLEREPDPSVKFDLTPQDRCVLLAHPDQDGKSAPAHLIHTGSLLQFIPIE
Sequences:
>Translated_399_residues MLWKLSRKLVPLLQQTGSLGIFSSEQESRRQVRFLRRFRFTRIGGRFVGIALLVSIAAFNTGNNPLYLLLGMLLSLILIS GTLSDITLKDLEVSRQLPSRIFAGQPVLVGLTLVNRKRRLPSFSLQVSERIEGLRREDWPSSYVLRVDPGAKVDTFYQQT FSRRGAWQLQGFEVATSFPFELFRKAVAIRDPQTVIVFPRLAPVQGLALWDQLSSGNQLRPQPGREGDYLSLRPYRPQDD VRSVHWKISAKRDQLIVRELERPRAQAITLCFENRWQPQKERPEIHRDKLERAVERCAGILFYLMREGYPVALVTLQERT PFGSDLAHQDHLLTVLARLTFVGDPQLSPPLEREPDPSVKFDLTPQDRCVLLAHPDQDGKSAPAHLIHTGSLLQFIPIE >Mature_399_residues MLWKLSRKLVPLLQQTGSLGIFSSEQESRRQVRFLRRFRFTRIGGRFVGIALLVSIAAFNTGNNPLYLLLGMLLSLILIS GTLSDITLKDLEVSRQLPSRIFAGQPVLVGLTLVNRKRRLPSFSLQVSERIEGLRREDWPSSYVLRVDPGAKVDTFYQQT FSRRGAWQLQGFEVATSFPFELFRKAVAIRDPQTVIVFPRLAPVQGLALWDQLSSGNQLRPQPGREGDYLSLRPYRPQDD VRSVHWKISAKRDQLIVRELERPRAQAITLCFENRWQPQKERPEIHRDKLERAVERCAGILFYLMREGYPVALVTLQERT PFGSDLAHQDHLLTVLARLTFVGDPQLSPPLEREPDPSVKFDLTPQDRCVLLAHPDQDGKSAPAHLIHTGSLLQFIPIE
Specific function: Unknown
COG id: COG1721
COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45583; Mature: 45583
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLWKLSRKLVPLLQQTGSLGIFSSEQESRRQVRFLRRFRFTRIGGRFVGIALLVSIAAFN CCCCHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC TGNNPLYLLLGMLLSLILISGTLSDITLKDLEVSRQLPSRIFAGQPVLVGLTLVNRKRRL CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCC PSFSLQVSERIEGLRREDWPSSYVLRVDPGAKVDTFYQQTFSRRGAWQLQGFEVATSFPF CCCCEEHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEECEEEECCCCH ELFRKAVAIRDPQTVIVFPRLAPVQGLALWDQLSSGNQLRPQPGREGDYLSLRPYRPQDD HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHH VRSVHWKISAKRDQLIVRELERPRAQAITLCFENRWQPQKERPEIHRDKLERAVERCAGI HHEEEEEEECCHHHHHHHHHCCCHHHEEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHH LFYLMREGYPVALVTLQERTPFGSDLAHQDHLLTVLARLTFVGDPQLSPPLEREPDPSVK HHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE FDLTPQDRCVLLAHPDQDGKSAPAHLIHTGSLLQFIPIE EECCCCCCEEEEECCCCCCCCCCCEEEECCCEEEEECCC >Mature Secondary Structure MLWKLSRKLVPLLQQTGSLGIFSSEQESRRQVRFLRRFRFTRIGGRFVGIALLVSIAAFN CCCCHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC TGNNPLYLLLGMLLSLILISGTLSDITLKDLEVSRQLPSRIFAGQPVLVGLTLVNRKRRL CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCC PSFSLQVSERIEGLRREDWPSSYVLRVDPGAKVDTFYQQTFSRRGAWQLQGFEVATSFPF CCCCEEHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEECEEEECCCCH ELFRKAVAIRDPQTVIVFPRLAPVQGLALWDQLSSGNQLRPQPGREGDYLSLRPYRPQDD HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHH VRSVHWKISAKRDQLIVRELERPRAQAITLCFENRWQPQKERPEIHRDKLERAVERCAGI HHEEEEEEECCHHHHHHHHHCCCHHHEEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHH LFYLMREGYPVALVTLQERTPFGSDLAHQDHLLTVLARLTFVGDPQLSPPLEREPDPSVK HHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE FDLTPQDRCVLLAHPDQDGKSAPAHLIHTGSLLQFIPIE EECCCCCCEEEEECCCCCCCCCCCEEEECCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA