| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is apcE [H]
Identifier: 86607927
GI number: 86607927
Start: 439914
End: 442607
Strand: Direct
Name: apcE [H]
Synonym: CYB_0431
Alternate gene names: 86607927
Gene position: 439914-442607 (Clockwise)
Preceding gene: 86607925
Following gene: 86607930
Centisome position: 14.44
GC content: 60.54
Gene sequence:
>2694_bases ATGGGTATCAACGTATCCGCTGGCGCAGTCGTTTCCAACCCCCGTCTCTACCAAACCGTGCCTGTATCGACCATCTCCCA GGCGGAACAGCAGGATCGCTATCTGGGACGCACCGAGCTGGATCGCCTCGAGGACTTTTTCTCCAGCGGCCTGAAACGGC TAGAGATTGCCGAGGTCATTGCGGCCAATTCGGAAATCATCGTCAGCCGGGCAGCCAACCGCATCTTCACAGGGGGCTCG CCCATGGCCTATCTGGAGCGGCCAGAAGCGACCCAAGACGAGAAAGAAGCCTTCAAGCTGGGTACTGCCTTCTACGTGGA ATCCACCGGCGGATTCATTGAGGCCATCCGCAACATCTTTAGCGCCAGCGGTGTGGAGATTCCCCCCAATTTCCGCCCCA TCAACATCTCCCGCTACGGAGCTGCCAACATGCGCAAATCGCTACGGGATCTGAGCTGGTTTTTGCGCTACGTTACCTAC GCCCTGGTGGCCGGGGATCCCAGTATCATCGCCGTCAACACGCGCGGCCTGCGGGAGATCATCGAAAATGCCTGCTCCGC CGAGGCCACCATTGTCGCCATTCAAGAGATGAAGCGGGCAGCGGCTGGCTACTTCCGCAAAGATGCCGAAGCAGTTGCCA TCATCAACCAATACTTCGATGTTTTGCTGAGCGAGTTCATCGCTCCCGCCCCTTCCGACAAGCTGCGGCAGCGCAATGCC AGCACCGCCGACGGGATCCCTCTGCAAGGGCTGCAGCTACCCCAGATCTACAACTTGGCTGCCGAAAAAGTTCCCGTTTT TGCCATGAAGCCGGGGCTGTCCAACGCCGAGAAAGAAGAAGTCATCAAGGCCGCCTACCGGCAGGTGTTTGAGCGGGATA TCCGCCGCGCCTACGGCCTCAAGCTTTCCGACCTGGAGTCGAAGGTGAAAAACGGCGAGATCTCCATGAAGGAGTTCATT CGCCGCCTGGGCAAATCGGAGCTGTATCGCAAGCAGTTCTACGAGCCTTACATCAACAGCCGCGTCGTGGAGCTGGCCTT CCGCCACTTCCTGGGGCGGGCTCCCGAAACCCGCGAGGAAGTGCAGACCTACTTCTCCATCATCTCCAGCAAGGGTCTGG CTGGCCTGGTGGACGCGCTGGTGGATAGCCGCGAGTACGGAGACTACTTCGGCGAAGAGACGGTACCCTACCTGCGCAAG CTGGGGGTAGAAGCGCAAACCAGCGCCAACTGGGGGGCCAAATTCGACCTCTACAACTACGCTGCCCCCCGCCGCAAGGT GCCCCAGTTCATTACCCTCTTTGCCCGCTACAACCGGCCCCTGCCGGATCAGCATGCCTATGGCTCCGGCAATGACCCGC TGGAGATCCAATTTGGGGCCATCTTCCCCAAGGAAACCCGTTCCCTCAGCGCCCGCCCTGCTCCCTTCAACAAAGATGTC AAGCGCATCCTCATCCGGCGCGGCTTTGCCCTGACCAACGAGCGCACCAATCCCAGAGCAGCAGGGGATCCCGGCAGCCT TGGCCCCAAAGTCTTCAAGCTCACCCAAACTCCCGGCGATCGCAGCCGGCGGCTAGGGGTGCGGGCGGGGATTGTTGGCA GCGAAGTCTCGACGCAAGCGGTGATCCGCGCCTGCTACCAGCAGGTGTACGGTTACATGCCCTACGAAGGCCAACGGCTA ACCCGTTGGGAGATCAAGCTGGAGTCGGGGGAAATTCCCGTCAAAGAGTTTATTCGCCAACTGGCCAAGTCGGATCTCTT CCGCAACAAGTACTGGTCCAGCTTGTATGTCTGCAAAGCCATCGAGTTCATCCACCGCAAGCTACTGGGCCGACCCACCT ACGGACGGCAAGAGATGAACCGCCTGTTTGACATTGCCTCCAAGCAGGGGTTCTACGCGGTGGTGGATGCCATCTTGGAC GGCGAGGAGTACCAGCAGGTCTTCGGGGAAGATATCGTGCCCTACGAGCGCTACCTCACCCCCGGCGGCCTGGCGCTGCG GCGGATGCGCCCCGGCTCCACCGACATGGCAGTGACCAAGCCCATTCGCACCGACGACGACATCCCTCTCTTTGTCAAGT TGGGTCAGCCTCGGGATATGCCTTCCGGCGAGCTGGAAATCCAGCGGCGGGCCCAGCAGGGGGTGCCCAAGGTACGCCAA GAGATCCCTGTCTTCAAGCTCACCAGCCTGGCCAACAAAGCGGAAGTCAACAACCTCATCCGCGCCGCCTACCGGCAGGT CTTCGAGCGGGATATGGACATCTACAACATCAGCGCCGAGCTCAGCTCTGCCGAGTCCAAGCTGCGCAACGGCGAGATCA CCGTCAAGGAGTTCATCGAGGCCCTGGGGTGTTCCGAGCTGTACCGCTCCGAGTTCTATGCCCCCTATCCCAACACCAAG GTGATCGAGCTGGGCACCAAGCACTTCCTGGGCCGTGCTCCTCTCAACCAGCAGGAGATCCGCAAGTACAACCAGATCTT GGCCACCCAGGGGGTGAAAGCCTTTGTGCGCGCCCTGCTGAACACCCAGGAGTATCGGGATCTCTTCGGCGAGGACACAG TGCCCTATCGCCGCTTCCCCACCTTGCCGGCGGCCAACTTCCCCAACACGCAGGAGCTGTACGGTCGTCTCACCAAGCAA AACCGCGAGCTGGTGGTGCCCAGCTTCAGCCCTGTGGGCAATGACCGTAGCTAG
Upstream 100 bases:
>100_bases TGCTCCTCCAGTCGTGGGTCAGCCTCTTCACCCCCTTCGATGGCACTGTCCTCGGCCTTTGTCGGCAGTTTTTTCGATCA AAACGGAGTTTAAAAGATCG
Downstream 100 bases:
>100_bases ATGGGGCTCTCAACTGCTCTCTTTCTTGTGAGAGAGGGGTCGGGGGTGAGGGGAGAGACGAGTTAGCTCCACAAAGGCAG AGGAGACTGGGCTTCATAGC
Product: phycobilisome 120 kDa linker polypeptide, core
Products: NA
Alternate protein names: Anchor polypeptide; PBS-anchor protein; Phycobilisome linker polypeptide [H]
Number of amino acids: Translated: 897; Mature: 896
Protein sequence:
>897_residues MGINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVIAANSEIIVSRAANRIFTGGS PMAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIFSASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTY ALVAGDPSIIAVNTRGLREIIENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA STADGIPLQGLQLPQIYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGLKLSDLESKVKNGEISMKEFI RRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREEVQTYFSIISSKGLAGLVDALVDSREYGDYFGEETVPYLRK LGVEAQTSANWGAKFDLYNYAAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDV KRILIRRGFALTNERTNPRAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQAVIRACYQQVYGYMPYEGQRL TRWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKAIEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILD GEEYQQVFGEDIVPYERYLTPGGLALRRMRPGSTDMAVTKPIRTDDDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVRQ EIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIEALGCSELYRSEFYAPYPNTK VIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALLNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQ NRELVVPSFSPVGNDRS
Sequences:
>Translated_897_residues MGINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVIAANSEIIVSRAANRIFTGGS PMAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIFSASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTY ALVAGDPSIIAVNTRGLREIIENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA STADGIPLQGLQLPQIYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGLKLSDLESKVKNGEISMKEFI RRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREEVQTYFSIISSKGLAGLVDALVDSREYGDYFGEETVPYLRK LGVEAQTSANWGAKFDLYNYAAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDV KRILIRRGFALTNERTNPRAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQAVIRACYQQVYGYMPYEGQRL TRWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKAIEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILD GEEYQQVFGEDIVPYERYLTPGGLALRRMRPGSTDMAVTKPIRTDDDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVRQ EIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIEALGCSELYRSEFYAPYPNTK VIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALLNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQ NRELVVPSFSPVGNDRS >Mature_896_residues GINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVIAANSEIIVSRAANRIFTGGSP MAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIFSASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTYA LVAGDPSIIAVNTRGLREIIENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNAS TADGIPLQGLQLPQIYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGLKLSDLESKVKNGEISMKEFIR RLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREEVQTYFSIISSKGLAGLVDALVDSREYGDYFGEETVPYLRKL GVEAQTSANWGAKFDLYNYAAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDVK RILIRRGFALTNERTNPRAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQAVIRACYQQVYGYMPYEGQRLT RWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKAIEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILDG EEYQQVFGEDIVPYERYLTPGGLALRRMRPGSTDMAVTKPIRTDDDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVRQE IPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIEALGCSELYRSEFYAPYPNTKV IELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALLNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQN RELVVPSFSPVGNDRS
Specific function: This protein is postulated to act both as terminal energy acceptor (by its phycobilin-like domains) and as a linker polypeptide (by its repeats and arms) that stabilizes the phycobilisome core architecture. Has intrinsic bilin lyase activity [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Anchors the phycobilisome perpendicularly to the cytoplasmic surface of the thylakoid membrane (By similarity) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 PBS-linker domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009050 - InterPro: IPR001297 - InterPro: IPR012128 - ProDom: PD000852 [H]
Pfam domain/function: PF00427 PBS_linker_poly; PF00502 Phycobilisome [H]
EC number: NA
Molecular weight: Translated: 101426; Mature: 101295
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVI CCCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AANSEIIVSRAANRIFTGGSPMAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIF HCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHH SASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTYALVAGDPSIIAVNTRGLREI HCCCCCCCCCCCEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH IENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA HHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC STADGIPLQGLQLPQIYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGL CCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC KLSDLESKVKNGEISMKEFIRRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREE CHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH VQTYFSIISSKGLAGLVDALVDSREYGDYFGEETVPYLRKLGVEAQTSANWGAKFDLYNY HHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEHHCC AAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDV CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCHHH KRILIRRGFALTNERTNPRAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQA HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCHHHCCCCCHHHHHH VIRACYQQVYGYMPYEGQRLTRWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKA HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILDGEEYQQVFGEDIVPYERYLT HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHCC PGGLALRRMRPGSTDMAVTKPIRTDDDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVRQ CCCHHHEECCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHH EIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIE HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEHHHHHH ALGCSELYRSEFYAPYPNTKVIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALL HHCHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH NTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQNRELVVPSFSPVGNDRS CHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCC >Mature Secondary Structure GINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVI CCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AANSEIIVSRAANRIFTGGSPMAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIF HCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHH SASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTYALVAGDPSIIAVNTRGLREI HCCCCCCCCCCCEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH IENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA HHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC STADGIPLQGLQLPQIYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGL CCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC KLSDLESKVKNGEISMKEFIRRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREE CHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH VQTYFSIISSKGLAGLVDALVDSREYGDYFGEETVPYLRKLGVEAQTSANWGAKFDLYNY HHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEHHCC AAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDV CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCHHH KRILIRRGFALTNERTNPRAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQA HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCHHHCCCCCHHHHHH VIRACYQQVYGYMPYEGQRLTRWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKA HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILDGEEYQQVFGEDIVPYERYLT HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHCC PGGLALRRMRPGSTDMAVTKPIRTDDDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVRQ CCCHHHEECCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHH EIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIE HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEHHHHHH ALGCSELYRSEFYAPYPNTKVIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALL HHCHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH NTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQNRELVVPSFSPVGNDRS CHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11759840; 8665889 [H]