| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is yhjX [H]
Identifier: 86607925
GI number: 86607925
Start: 436073
End: 437302
Strand: Direct
Name: yhjX [H]
Synonym: CYB_0428
Alternate gene names: 86607925
Gene position: 436073-437302 (Clockwise)
Preceding gene: 86607924
Following gene: 86607927
Centisome position: 14.31
GC content: 58.78
Gene sequence:
>1230_bases ATGGGGAGATGGCTTTTCATCCTCCAGGGGCTCCTGGTTCTTCTTTGCTTGGGAACCGTCTATTCCTGGAGCATTTTCCG CAAGCCCCTGGAAACAGAGCTGGGGATTGGGGCCAGTGAGAGCCTGCTGCCCTACACGGTTGCCCTCGTGTTCTACGCTA CCCTCATGCCCATCACAGGGTTTGTCATCCCCCGCTGGGGATCCCGCCGAGTACTGGCTCTGGGGGGCAGCTTGGTGGGT TTGGGCTATGGGCTGGCTAGCTTTGCCCCTTCTATTGGGTGGATCACCCTCTGCTATGGGGTGATTGCCGGTAGCGGAGT AGGGGTTGCCTATGGGGTGCCGATGGCCGTGGCAGCCCGTTGGTTTCCCGATTGCAAGGGATTGGCCGTGGGATCCACCA TTGTCGGCTTTGGCCTATCCCCCCTGCTCACTGCTCCCCTGGCCAACTGCTTGATCGAGGCACTGGGGGCTCGGCCTACG CTGCTGATTTTGGGGATCCTCTTTGCAGCGGTGATCTTGGGGATCGCAACCCAACTGAGATTTCCTCCCCCCGATTGGAT CCCTTCCTCACCTTTTCCAAGAAAATCCACGAATGGCCCAGATCGCTCTCCGTTGACTTCTCGGCGCTCTCTCCCTCTGC TGAGAAACCCCTCCTTCTATGGCCTGTGGATCTGCTACGCCATCGGCACTCTGATCGGTTTAAGCGCCATTGGGATTTCT GGTCCTGTGGGGGAAGAGCTGATCGGCCTGGATCCCCCTGCGGCTGCCAACAGCGTGGCTCTCTTCGCCATTTTCAACGG GCTCAGCCGTCCTCTGTTTGGCTGGTTGGCCGATCGATTACATCCCCATCAGGTCACTACGGGCTCCTATGGGCTGATCC TGCTGGCCTGTGGGCTAATGCTCCTGCCTCCTCAGGGATCCCTTCTGGCCTACTGGGTAACTTTTTCCTTGCTTTGGTTT TGCCTGGGGGGGTGGCTGGCCATGGCTCCCGCCCTGACCCTGCGCTTGTTTGATCCCGAACGCTACGCCCAGAACTACGG CATTGTGTTTACCGCCTATGGAGTTGGGGCCTTGGTGGGAACGATGATCGCGGGGCAAATTCGCGATAGGCTGGGCAGCT ATAGCTATACCTTTTATGGGATGGCCGCCTTGGCGGTGGTGGGGATCTGGGTGGCCAACGCTTTTTTGAAGGAGAAGCGG AAGTTAACGCGGCAGGGATCCCATAAGTAG
Upstream 100 bases:
>100_bases GAAAGGGCTGAGAGAATGGGTTGAACTCAGCTCCAACAAGCTCTAGATACCCATGAAAAGGGTTGGATTCCCCGTTACTT TGTATGGACAACCGGCCCAT
Downstream 100 bases:
>100_bases AGGCAGCAATCTGGCGCTAGGCACTGCTAGCGCGAGCGGCGATTTCATACTCCCCACTGCAAGGCTGAGTGAACCAACTT AAAGACTTGCCCCCCCACGG
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MGRWLFILQGLLVLLCLGTVYSWSIFRKPLETELGIGASESLLPYTVALVFYATLMPITGFVIPRWGSRRVLALGGSLVG LGYGLASFAPSIGWITLCYGVIAGSGVGVAYGVPMAVAARWFPDCKGLAVGSTIVGFGLSPLLTAPLANCLIEALGARPT LLILGILFAAVILGIATQLRFPPPDWIPSSPFPRKSTNGPDRSPLTSRRSLPLLRNPSFYGLWICYAIGTLIGLSAIGIS GPVGEELIGLDPPAAANSVALFAIFNGLSRPLFGWLADRLHPHQVTTGSYGLILLACGLMLLPPQGSLLAYWVTFSLLWF CLGGWLAMAPALTLRLFDPERYAQNYGIVFTAYGVGALVGTMIAGQIRDRLGSYSYTFYGMAALAVVGIWVANAFLKEKR KLTRQGSHK
Sequences:
>Translated_409_residues MGRWLFILQGLLVLLCLGTVYSWSIFRKPLETELGIGASESLLPYTVALVFYATLMPITGFVIPRWGSRRVLALGGSLVG LGYGLASFAPSIGWITLCYGVIAGSGVGVAYGVPMAVAARWFPDCKGLAVGSTIVGFGLSPLLTAPLANCLIEALGARPT LLILGILFAAVILGIATQLRFPPPDWIPSSPFPRKSTNGPDRSPLTSRRSLPLLRNPSFYGLWICYAIGTLIGLSAIGIS GPVGEELIGLDPPAAANSVALFAIFNGLSRPLFGWLADRLHPHQVTTGSYGLILLACGLMLLPPQGSLLAYWVTFSLLWF CLGGWLAMAPALTLRLFDPERYAQNYGIVFTAYGVGALVGTMIAGQIRDRLGSYSYTFYGMAALAVVGIWVANAFLKEKR KLTRQGSHK >Mature_408_residues GRWLFILQGLLVLLCLGTVYSWSIFRKPLETELGIGASESLLPYTVALVFYATLMPITGFVIPRWGSRRVLALGGSLVGL GYGLASFAPSIGWITLCYGVIAGSGVGVAYGVPMAVAARWFPDCKGLAVGSTIVGFGLSPLLTAPLANCLIEALGARPTL LILGILFAAVILGIATQLRFPPPDWIPSSPFPRKSTNGPDRSPLTSRRSLPLLRNPSFYGLWICYAIGTLIGLSAIGISG PVGEELIGLDPPAAANSVALFAIFNGLSRPLFGWLADRLHPHQVTTGSYGLILLACGLMLLPPQGSLLAYWVTFSLLWFC LGGWLAMAPALTLRLFDPERYAQNYGIVFTAYGVGALVGTMIAGQIRDRLGSYSYTFYGMAALAVVGIWVANAFLKEKRK LTRQGSHK
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI34916028, Length=162, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=6e-12, Organism=Escherichia coli, GI1789969, Length=403, Percent_Identity=25.8064516129032, Blast_Score=140, Evalue=1e-34, Organism=Drosophila melanogaster, GI281360217, Length=188, Percent_Identity=29.2553191489362, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI28573971, Length=188, Percent_Identity=29.2553191489362, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004741 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 43717; Mature: 43586
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRWLFILQGLLVLLCLGTVYSWSIFRKPLETELGIGASESLLPYTVALVFYATLMPITG CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC FVIPRWGSRRVLALGGSLVGLGYGLASFAPSIGWITLCYGVIAGSGVGVAYGVPMAVAAR EEECCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCHHHHHHH WFPDCKGLAVGSTIVGFGLSPLLTAPLANCLIEALGARPTLLILGILFAAVILGIATQLR HCCCCCCCEECCHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC FPPPDWIPSSPFPRKSTNGPDRSPLTSRRSLPLLRNPSFYGLWICYAIGTLIGLSAIGIS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC GPVGEELIGLDPPAAANSVALFAIFNGLSRPLFGWLADRLHPHQVTTGSYGLILLACGLM CCCCCHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHH LLPPQGSLLAYWVTFSLLWFCLGGWLAMAPALTLRLFDPERYAQNYGIVFTAYGVGALVG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHCCCCEEEEHHHHHHHHH TMIAGQIRDRLGSYSYTFYGMAALAVVGIWVANAFLKEKRKLTRQGSHK HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure GRWLFILQGLLVLLCLGTVYSWSIFRKPLETELGIGASESLLPYTVALVFYATLMPITG CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC FVIPRWGSRRVLALGGSLVGLGYGLASFAPSIGWITLCYGVIAGSGVGVAYGVPMAVAAR EEECCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCHHHHHHH WFPDCKGLAVGSTIVGFGLSPLLTAPLANCLIEALGARPTLLILGILFAAVILGIATQLR HCCCCCCCEECCHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC FPPPDWIPSSPFPRKSTNGPDRSPLTSRRSLPLLRNPSFYGLWICYAIGTLIGLSAIGIS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC GPVGEELIGLDPPAAANSVALFAIFNGLSRPLFGWLADRLHPHQVTTGSYGLILLACGLM CCCCCHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHH LLPPQGSLLAYWVTFSLLWFCLGGWLAMAPALTLRLFDPERYAQNYGIVFTAYGVGALVG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHCCCCEEEEHHHHHHHHH TMIAGQIRDRLGSYSYTFYGMAALAVVGIWVANAFLKEKRKLTRQGSHK HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]