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The map label for this gene is apcE [H]

Identifier: 86607927

GI number: 86607927

Start: 439914

End: 442607

Strand: Direct

Name: apcE [H]

Synonym: CYB_0431

Alternate gene names: 86607927

Gene position: 439914-442607 (Clockwise)

Preceding gene: 86607925

Following gene: 86607930

Centisome position: 14.44

GC content: 60.54

Gene sequence:

>2694_bases
ATGGGTATCAACGTATCCGCTGGCGCAGTCGTTTCCAACCCCCGTCTCTACCAAACCGTGCCTGTATCGACCATCTCCCA
GGCGGAACAGCAGGATCGCTATCTGGGACGCACCGAGCTGGATCGCCTCGAGGACTTTTTCTCCAGCGGCCTGAAACGGC
TAGAGATTGCCGAGGTCATTGCGGCCAATTCGGAAATCATCGTCAGCCGGGCAGCCAACCGCATCTTCACAGGGGGCTCG
CCCATGGCCTATCTGGAGCGGCCAGAAGCGACCCAAGACGAGAAAGAAGCCTTCAAGCTGGGTACTGCCTTCTACGTGGA
ATCCACCGGCGGATTCATTGAGGCCATCCGCAACATCTTTAGCGCCAGCGGTGTGGAGATTCCCCCCAATTTCCGCCCCA
TCAACATCTCCCGCTACGGAGCTGCCAACATGCGCAAATCGCTACGGGATCTGAGCTGGTTTTTGCGCTACGTTACCTAC
GCCCTGGTGGCCGGGGATCCCAGTATCATCGCCGTCAACACGCGCGGCCTGCGGGAGATCATCGAAAATGCCTGCTCCGC
CGAGGCCACCATTGTCGCCATTCAAGAGATGAAGCGGGCAGCGGCTGGCTACTTCCGCAAAGATGCCGAAGCAGTTGCCA
TCATCAACCAATACTTCGATGTTTTGCTGAGCGAGTTCATCGCTCCCGCCCCTTCCGACAAGCTGCGGCAGCGCAATGCC
AGCACCGCCGACGGGATCCCTCTGCAAGGGCTGCAGCTACCCCAGATCTACAACTTGGCTGCCGAAAAAGTTCCCGTTTT
TGCCATGAAGCCGGGGCTGTCCAACGCCGAGAAAGAAGAAGTCATCAAGGCCGCCTACCGGCAGGTGTTTGAGCGGGATA
TCCGCCGCGCCTACGGCCTCAAGCTTTCCGACCTGGAGTCGAAGGTGAAAAACGGCGAGATCTCCATGAAGGAGTTCATT
CGCCGCCTGGGCAAATCGGAGCTGTATCGCAAGCAGTTCTACGAGCCTTACATCAACAGCCGCGTCGTGGAGCTGGCCTT
CCGCCACTTCCTGGGGCGGGCTCCCGAAACCCGCGAGGAAGTGCAGACCTACTTCTCCATCATCTCCAGCAAGGGTCTGG
CTGGCCTGGTGGACGCGCTGGTGGATAGCCGCGAGTACGGAGACTACTTCGGCGAAGAGACGGTACCCTACCTGCGCAAG
CTGGGGGTAGAAGCGCAAACCAGCGCCAACTGGGGGGCCAAATTCGACCTCTACAACTACGCTGCCCCCCGCCGCAAGGT
GCCCCAGTTCATTACCCTCTTTGCCCGCTACAACCGGCCCCTGCCGGATCAGCATGCCTATGGCTCCGGCAATGACCCGC
TGGAGATCCAATTTGGGGCCATCTTCCCCAAGGAAACCCGTTCCCTCAGCGCCCGCCCTGCTCCCTTCAACAAAGATGTC
AAGCGCATCCTCATCCGGCGCGGCTTTGCCCTGACCAACGAGCGCACCAATCCCAGAGCAGCAGGGGATCCCGGCAGCCT
TGGCCCCAAAGTCTTCAAGCTCACCCAAACTCCCGGCGATCGCAGCCGGCGGCTAGGGGTGCGGGCGGGGATTGTTGGCA
GCGAAGTCTCGACGCAAGCGGTGATCCGCGCCTGCTACCAGCAGGTGTACGGTTACATGCCCTACGAAGGCCAACGGCTA
ACCCGTTGGGAGATCAAGCTGGAGTCGGGGGAAATTCCCGTCAAAGAGTTTATTCGCCAACTGGCCAAGTCGGATCTCTT
CCGCAACAAGTACTGGTCCAGCTTGTATGTCTGCAAAGCCATCGAGTTCATCCACCGCAAGCTACTGGGCCGACCCACCT
ACGGACGGCAAGAGATGAACCGCCTGTTTGACATTGCCTCCAAGCAGGGGTTCTACGCGGTGGTGGATGCCATCTTGGAC
GGCGAGGAGTACCAGCAGGTCTTCGGGGAAGATATCGTGCCCTACGAGCGCTACCTCACCCCCGGCGGCCTGGCGCTGCG
GCGGATGCGCCCCGGCTCCACCGACATGGCAGTGACCAAGCCCATTCGCACCGACGACGACATCCCTCTCTTTGTCAAGT
TGGGTCAGCCTCGGGATATGCCTTCCGGCGAGCTGGAAATCCAGCGGCGGGCCCAGCAGGGGGTGCCCAAGGTACGCCAA
GAGATCCCTGTCTTCAAGCTCACCAGCCTGGCCAACAAAGCGGAAGTCAACAACCTCATCCGCGCCGCCTACCGGCAGGT
CTTCGAGCGGGATATGGACATCTACAACATCAGCGCCGAGCTCAGCTCTGCCGAGTCCAAGCTGCGCAACGGCGAGATCA
CCGTCAAGGAGTTCATCGAGGCCCTGGGGTGTTCCGAGCTGTACCGCTCCGAGTTCTATGCCCCCTATCCCAACACCAAG
GTGATCGAGCTGGGCACCAAGCACTTCCTGGGCCGTGCTCCTCTCAACCAGCAGGAGATCCGCAAGTACAACCAGATCTT
GGCCACCCAGGGGGTGAAAGCCTTTGTGCGCGCCCTGCTGAACACCCAGGAGTATCGGGATCTCTTCGGCGAGGACACAG
TGCCCTATCGCCGCTTCCCCACCTTGCCGGCGGCCAACTTCCCCAACACGCAGGAGCTGTACGGTCGTCTCACCAAGCAA
AACCGCGAGCTGGTGGTGCCCAGCTTCAGCCCTGTGGGCAATGACCGTAGCTAG

Upstream 100 bases:

>100_bases
TGCTCCTCCAGTCGTGGGTCAGCCTCTTCACCCCCTTCGATGGCACTGTCCTCGGCCTTTGTCGGCAGTTTTTTCGATCA
AAACGGAGTTTAAAAGATCG

Downstream 100 bases:

>100_bases
ATGGGGCTCTCAACTGCTCTCTTTCTTGTGAGAGAGGGGTCGGGGGTGAGGGGAGAGACGAGTTAGCTCCACAAAGGCAG
AGGAGACTGGGCTTCATAGC

Product: phycobilisome 120 kDa linker polypeptide, core

Products: NA

Alternate protein names: Anchor polypeptide; PBS-anchor protein; Phycobilisome linker polypeptide [H]

Number of amino acids: Translated: 897; Mature: 896

Protein sequence:

>897_residues
MGINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVIAANSEIIVSRAANRIFTGGS
PMAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIFSASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTY
ALVAGDPSIIAVNTRGLREIIENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA
STADGIPLQGLQLPQIYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGLKLSDLESKVKNGEISMKEFI
RRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREEVQTYFSIISSKGLAGLVDALVDSREYGDYFGEETVPYLRK
LGVEAQTSANWGAKFDLYNYAAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDV
KRILIRRGFALTNERTNPRAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQAVIRACYQQVYGYMPYEGQRL
TRWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKAIEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILD
GEEYQQVFGEDIVPYERYLTPGGLALRRMRPGSTDMAVTKPIRTDDDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVRQ
EIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIEALGCSELYRSEFYAPYPNTK
VIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALLNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQ
NRELVVPSFSPVGNDRS

Sequences:

>Translated_897_residues
MGINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVIAANSEIIVSRAANRIFTGGS
PMAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIFSASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTY
ALVAGDPSIIAVNTRGLREIIENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA
STADGIPLQGLQLPQIYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGLKLSDLESKVKNGEISMKEFI
RRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREEVQTYFSIISSKGLAGLVDALVDSREYGDYFGEETVPYLRK
LGVEAQTSANWGAKFDLYNYAAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDV
KRILIRRGFALTNERTNPRAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQAVIRACYQQVYGYMPYEGQRL
TRWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKAIEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILD
GEEYQQVFGEDIVPYERYLTPGGLALRRMRPGSTDMAVTKPIRTDDDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVRQ
EIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIEALGCSELYRSEFYAPYPNTK
VIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALLNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQ
NRELVVPSFSPVGNDRS
>Mature_896_residues
GINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVIAANSEIIVSRAANRIFTGGSP
MAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIFSASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTYA
LVAGDPSIIAVNTRGLREIIENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNAS
TADGIPLQGLQLPQIYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGLKLSDLESKVKNGEISMKEFIR
RLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREEVQTYFSIISSKGLAGLVDALVDSREYGDYFGEETVPYLRKL
GVEAQTSANWGAKFDLYNYAAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDVK
RILIRRGFALTNERTNPRAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQAVIRACYQQVYGYMPYEGQRLT
RWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKAIEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILDG
EEYQQVFGEDIVPYERYLTPGGLALRRMRPGSTDMAVTKPIRTDDDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVRQE
IPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIEALGCSELYRSEFYAPYPNTKV
IELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALLNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQN
RELVVPSFSPVGNDRS

Specific function: This protein is postulated to act both as terminal energy acceptor (by its phycobilin-like domains) and as a linker polypeptide (by its repeats and arms) that stabilizes the phycobilisome core architecture. Has intrinsic bilin lyase activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Anchors the phycobilisome perpendicularly to the cytoplasmic surface of the thylakoid membrane (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 PBS-linker domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR001297
- InterPro:   IPR012128
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly; PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 101426; Mature: 101295

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVI
CCCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AANSEIIVSRAANRIFTGGSPMAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIF
HCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHH
SASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTYALVAGDPSIIAVNTRGLREI
HCCCCCCCCCCCEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH
IENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA
HHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
STADGIPLQGLQLPQIYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGL
CCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
KLSDLESKVKNGEISMKEFIRRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREE
CHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VQTYFSIISSKGLAGLVDALVDSREYGDYFGEETVPYLRKLGVEAQTSANWGAKFDLYNY
HHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEHHCC
AAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDV
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCHHH
KRILIRRGFALTNERTNPRAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCHHHCCCCCHHHHHH
VIRACYQQVYGYMPYEGQRLTRWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKA
HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILDGEEYQQVFGEDIVPYERYLT
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHCC
PGGLALRRMRPGSTDMAVTKPIRTDDDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVRQ
CCCHHHEECCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHH
EIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIE
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEHHHHHH
ALGCSELYRSEFYAPYPNTKVIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALL
HHCHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
NTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQNRELVVPSFSPVGNDRS
CHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCC
>Mature Secondary Structure 
GINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVI
CCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AANSEIIVSRAANRIFTGGSPMAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIF
HCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHH
SASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTYALVAGDPSIIAVNTRGLREI
HCCCCCCCCCCCEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH
IENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA
HHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
STADGIPLQGLQLPQIYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGL
CCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
KLSDLESKVKNGEISMKEFIRRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREE
CHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VQTYFSIISSKGLAGLVDALVDSREYGDYFGEETVPYLRKLGVEAQTSANWGAKFDLYNY
HHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEHHCC
AAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDV
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCHHH
KRILIRRGFALTNERTNPRAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCHHHCCCCCHHHHHH
VIRACYQQVYGYMPYEGQRLTRWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKA
HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILDGEEYQQVFGEDIVPYERYLT
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHCC
PGGLALRRMRPGSTDMAVTKPIRTDDDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVRQ
CCCHHHEECCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHH
EIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIE
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEHHHHHH
ALGCSELYRSEFYAPYPNTKVIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALL
HHCHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
NTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQNRELVVPSFSPVGNDRS
CHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840; 8665889 [H]