| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is nifK [H]
Identifier: 86607920
GI number: 86607920
Start: 432348
End: 433883
Strand: Direct
Name: nifK [H]
Synonym: CYB_0423
Alternate gene names: 86607920
Gene position: 432348-433883 (Clockwise)
Preceding gene: 86607919
Following gene: 86607921
Centisome position: 14.19
GC content: 58.72
Gene sequence:
>1536_bases ATGCCGCAAGATATCCAAGACATCAAAGATCATGCCCGCCTGTTTCAAGATCCGGAATATCAGGCGCTTCTGCAGTGCAA GCAAACCTTTGAAGATCTCCCTTCCCCGGAAGAAGTGGCCCGGGTGGCCGAATGGACAAAATCTTGGGAATACCGGGAGA AAAACTTTCAGCGGGAAGCTTTGACGATAAACCCTGCCAAAGCCTGCCAACCCTTGGGGGCCATCTTCGCCGCTGTCGGC TTCGAGGGAACTCTGCCCTTTGTCCATGGATCCCAGGGGTGTGTGGCCTATTTTCGCACCCATCTCACCCGCCACTTTAA GGAGCCCTTTTCGGCGGTCTCCACCTCGATGACGGAAGATGCGGCGGTGTTTGGCGGCCTCAAAAACCTAATCGAGGGAC TGGAAAATGCCTACGCCCTCTACAAGCCCAAGATGATCGCCGTGTGCACCACCTGCATGGCGGAGGTGATCGGGGATGAC CTGGGGGCCTTCATCACCACGGCCAGAAATGAGGGAGTGATTTCCCGCGACTTCCCGGTGCCCTATGCCCACACGCCAAG CTTTGTGGGATCCCACATCACCGGCTATGACAACATGCTCAAGGCCATTCTCAGCACCCTCACCGAGCCGGTGGGCCGCA CGGGTAGCAATGGCTACATCAACGTCATCCCCGGTTTCGATACCTACATGGGCAACTTGCGGGAGATCAAGCGCATCTTC GGCTTATTCGGGATCCCGCTGACTTTGCTGGCGGACAACTCCGACTATTTGGATTCGCCCAACGACGGCACTTTCCACAT GTATCCCGGCGGAACCCCTCTGGAGGTGGCCGCCCAATGCTTGAACGCCGAGGCTACTTTTTCCTTCCAGCGCTACACCA CGCCCAAGACCCTGGAGTTTCTAGCAGAGGCCTCGGGTCGGCCCACCCTGACGGCGCGGCCAGTGGGTATTCGGGGCACG GATGAGTTTTTGATGCAGCTATCCCAGTTAACGGGCAAGCCCATTCCCGCCGAGCTGGAGATCGAACGGGGCCGGGCGGT GGATGCTTTCACGGACTCCCAAGCGTGGATCCACGGCAAGCGGGTAGCCCTGTATGGGGATCCGGATCTGGTGATGGGCT TGCTCAGCCTGTTGCTGGAGCTGGGAGCGGAGCCGATCCATGTGGTGGTGACCAACAGCAACGAGGAGTTCGAAGCCGAG GCGCGGGCACTGCTGGCCTCCAGTCCCTATGGACAGGGGGCAACCGTCTGGGGGGGCAAGGATCTCTGGCATCTGCGCTC TCTGATGTTCACCGAGCCGGTGGATCTGCTGATCGGCAATTCCTACGGCAAATACCTGTGGCGGGATACGGGCACGCCTT TGGTGCGCATCGGCTACCCCATCTTCGACCGCCACCATCTGCATCGCTATCCCACCTATGGCTATGTGGGGGCGCTCAAC CTCCTTAACTGGATTGTCAACACCATTCTGGATGAGGCAGATCGGCGCAGCATCATCCCCGGCAAAACCGACATCTCCTT CGACTTAATTCGTTAG
Upstream 100 bases:
>100_bases CCTGGGATCTGGTCAAAGCCCCCTGGAAATCCTAGCTTGCCGCCGGGATCCCAGACGCCAACGGCCCTTCCTTCCCCTGC CCCTCATTAGGAGACCGACC
Downstream 100 bases:
>100_bases CTTCCGGAGTAGGGGGATCCCAGAGGCCGGACTTTGTCGGACTTTGTCAAGGATCCCCTGCTCCAAAGACTCCACCCCGC TAAGAGGAACAGCCAAGCCT
Product: nitrogenase molybdenum-iron protein beta chain
Products: NA
Alternate protein names: Dinitrogenase; Nitrogenase component I [H]
Number of amino acids: Translated: 511; Mature: 510
Protein sequence:
>511_residues MPQDIQDIKDHARLFQDPEYQALLQCKQTFEDLPSPEEVARVAEWTKSWEYREKNFQREALTINPAKACQPLGAIFAAVG FEGTLPFVHGSQGCVAYFRTHLTRHFKEPFSAVSTSMTEDAAVFGGLKNLIEGLENAYALYKPKMIAVCTTCMAEVIGDD LGAFITTARNEGVISRDFPVPYAHTPSFVGSHITGYDNMLKAILSTLTEPVGRTGSNGYINVIPGFDTYMGNLREIKRIF GLFGIPLTLLADNSDYLDSPNDGTFHMYPGGTPLEVAAQCLNAEATFSFQRYTTPKTLEFLAEASGRPTLTARPVGIRGT DEFLMQLSQLTGKPIPAELEIERGRAVDAFTDSQAWIHGKRVALYGDPDLVMGLLSLLLELGAEPIHVVVTNSNEEFEAE ARALLASSPYGQGATVWGGKDLWHLRSLMFTEPVDLLIGNSYGKYLWRDTGTPLVRIGYPIFDRHHLHRYPTYGYVGALN LLNWIVNTILDEADRRSIIPGKTDISFDLIR
Sequences:
>Translated_511_residues MPQDIQDIKDHARLFQDPEYQALLQCKQTFEDLPSPEEVARVAEWTKSWEYREKNFQREALTINPAKACQPLGAIFAAVG FEGTLPFVHGSQGCVAYFRTHLTRHFKEPFSAVSTSMTEDAAVFGGLKNLIEGLENAYALYKPKMIAVCTTCMAEVIGDD LGAFITTARNEGVISRDFPVPYAHTPSFVGSHITGYDNMLKAILSTLTEPVGRTGSNGYINVIPGFDTYMGNLREIKRIF GLFGIPLTLLADNSDYLDSPNDGTFHMYPGGTPLEVAAQCLNAEATFSFQRYTTPKTLEFLAEASGRPTLTARPVGIRGT DEFLMQLSQLTGKPIPAELEIERGRAVDAFTDSQAWIHGKRVALYGDPDLVMGLLSLLLELGAEPIHVVVTNSNEEFEAE ARALLASSPYGQGATVWGGKDLWHLRSLMFTEPVDLLIGNSYGKYLWRDTGTPLVRIGYPIFDRHHLHRYPTYGYVGALN LLNWIVNTILDEADRRSIIPGKTDISFDLIR >Mature_510_residues PQDIQDIKDHARLFQDPEYQALLQCKQTFEDLPSPEEVARVAEWTKSWEYREKNFQREALTINPAKACQPLGAIFAAVGF EGTLPFVHGSQGCVAYFRTHLTRHFKEPFSAVSTSMTEDAAVFGGLKNLIEGLENAYALYKPKMIAVCTTCMAEVIGDDL GAFITTARNEGVISRDFPVPYAHTPSFVGSHITGYDNMLKAILSTLTEPVGRTGSNGYINVIPGFDTYMGNLREIKRIFG LFGIPLTLLADNSDYLDSPNDGTFHMYPGGTPLEVAAQCLNAEATFSFQRYTTPKTLEFLAEASGRPTLTARPVGIRGTD EFLMQLSQLTGKPIPAELEIERGRAVDAFTDSQAWIHGKRVALYGDPDLVMGLLSLLLELGAEPIHVVVTNSNEEFEAEA RALLASSPYGQGATVWGGKDLWHLRSLMFTEPVDLLIGNSYGKYLWRDTGTPLVRIGYPIFDRHHLHRYPTYGYVGALNL LNWIVNTILDEADRRSIIPGKTDISFDLIR
Specific function: This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation [H]
COG id: COG2710
COG function: function code C; Nitrogenase molybdenum-iron protein, alpha and beta chains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nifD/nifK/nifE/nifN family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000510 - InterPro: IPR000318 - InterPro: IPR005976 [H]
Pfam domain/function: PF00148 Oxidored_nitro [H]
EC number: =1.18.6.1 [H]
Molecular weight: Translated: 56702; Mature: 56571
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS00039 DEAD_ATP_HELICASE ; PS00699 NITROGENASE_1_1 ; PS00090 NITROGENASE_1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQDIQDIKDHARLFQDPEYQALLQCKQTFEDLPSPEEVARVAEWTKSWEYREKNFQREA CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCE LTINPAKACQPLGAIFAAVGFEGTLPFVHGSQGCVAYFRTHLTRHFKEPFSAVSTSMTED EEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAVFGGLKNLIEGLENAYALYKPKMIAVCTTCMAEVIGDDLGAFITTARNEGVISRDFPV HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEECCCCC PYAHTPSFVGSHITGYDNMLKAILSTLTEPVGRTGSNGYINVIPGFDTYMGNLREIKRIF CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCHHHHHHHH GLFGIPLTLLADNSDYLDSPNDGTFHMYPGGTPLEVAAQCLNAEATFSFQRYTTPKTLEF HHHCCCEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHCCCHHHHHH LAEASGRPTLTARPVGIRGTDEFLMQLSQLTGKPIPAELEIERGRAVDAFTDSQAWIHGK HHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCEEECCCCCCCEEECC RVALYGDPDLVMGLLSLLLELGAEPIHVVVTNSNEEFEAEARALLASSPYGQGATVWGGK EEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEECCC DLWHLRSLMFTEPVDLLIGNSYGKYLWRDTGTPLVRIGYPIFDRHHLHRYPTYGYVGALN HHHHHHHHHHCCCHHHEECCCCCCEEECCCCCCEEEECCCHHCCCHHHCCCCCHHHHHHH LLNWIVNTILDEADRRSIIPGKTDISFDLIR HHHHHHHHHHHHHCCCCCCCCCCCCCEEECC >Mature Secondary Structure PQDIQDIKDHARLFQDPEYQALLQCKQTFEDLPSPEEVARVAEWTKSWEYREKNFQREA CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCE LTINPAKACQPLGAIFAAVGFEGTLPFVHGSQGCVAYFRTHLTRHFKEPFSAVSTSMTED EEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAVFGGLKNLIEGLENAYALYKPKMIAVCTTCMAEVIGDDLGAFITTARNEGVISRDFPV HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEECCCCC PYAHTPSFVGSHITGYDNMLKAILSTLTEPVGRTGSNGYINVIPGFDTYMGNLREIKRIF CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCHHHHHHHH GLFGIPLTLLADNSDYLDSPNDGTFHMYPGGTPLEVAAQCLNAEATFSFQRYTTPKTLEF HHHCCCEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHCCCHHHHHH LAEASGRPTLTARPVGIRGTDEFLMQLSQLTGKPIPAELEIERGRAVDAFTDSQAWIHGK HHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCEEECCCCCCCEEECC RVALYGDPDLVMGLLSLLLELGAEPIHVVVTNSNEEFEAEARALLASSPYGQGATVWGGK EEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEECCC DLWHLRSLMFTEPVDLLIGNSYGKYLWRDTGTPLVRIGYPIFDRHHLHRYPTYGYVGALN HHHHHHHHHHCCCHHHEECCCCCCEEECCCCCCEEEECCCHHCCCHHHCCCCCHHHHHHH LLNWIVNTILDEADRRSIIPGKTDISFDLIR HHHHHHHHHHHHHCCCCCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA