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The map label for this gene is ydcM [C]

Identifier: 86607731

GI number: 86607731

Start: 241643

End: 242836

Strand: Direct

Name: ydcM [C]

Synonym: CYB_0233

Alternate gene names: 86607731

Gene position: 241643-242836 (Clockwise)

Preceding gene: 86607730

Following gene: 86607733

Centisome position: 7.93

GC content: 56.87

Gene sequence:

>1194_bases
ATGACTCAAGTCCTGACCGTCCCCTGCAAGCTCAAGGTGTCCCAGTCGCAAGCCGCAAAGTTGGATGCGACAATGGATGC
CTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAGTCCCTTTGCT
ATTACCAGATTCGCGCCCGGTTCGGCTTATCCAGTAACTTGGCTCAGCAGGTCTGCAGGCGGCTGGCCGGCGCCCGTAAA
GTTGCCCAACAGAAAAACCGCCCCGTCAAAGCGTTCAAGGGTGGCTTCGCTACCTACGACGCTCGTATCTTTTCGTTCCG
CGAGAAAGACTGGACGGTGTCGCTGACCACGGTGGAGGGTCGGGAGCGCTTTGAGCTGGCGATTGGCCGCTACCAGAGAG
AACGGCTGGCGGGCTCCAATCCCAAATCTGCCACTCTGGTCAAGCGTAAAGACGGCTCCTACTCCATTCAAATCTGTGTG
GAAGCGGAGCCATCCCCACCGCAACGCACGGGTAGAGTGCTGGGGGTGGACTTGGGAAGGACAGATATTGCCCATACGTC
AGAAGGGGATAACTGGAATGGACAGCAGTTGAACCGAATCCGAGACCACTACTCCCGGTTGAGGGCGGCACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCCGTCAACTGCTGCAACGGCTGTCTGGCAAGGAGAGGCGCTTT
CAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGACCACAAACAGCGCTATTGCCCTGGAAGA
CCTGACAGGGATCCGGAAAAGAGTCAATCAACAACCCCGCAGCAAAGCCGAGCGGCGCAGGGCCAACAGTTGGGCGTTCT
ACCAACTACGTCAGTTTCTGGAATACAAGGCGAGGGCTGCAGGGGTTTCTCTGATTCTTGTGCCGCCTGCTTACACGTCG
CAGACCTGTCACAAGTGTTTACACATCCACCCTGAGCAGGGCAAGTCCTACCGCAGTGGCAAGTCGTTCAAGTGTGGGCA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTGGGGGCTGCTGTGAACCAGCCTAGAG
GTTCGTGGTTGGCTTGCCAACTGCAGGGCTACCGAAAGCCCGCCCTGTACTGCGAAGCAGTCAGGGTCGGGTAG

Upstream 100 bases:

>100_bases
GGAGCGGCCTCTTCGAGAATTTTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAAT
GCGGAAGTTATGATAGAACC

Downstream 100 bases:

>100_bases
TTTACAACCATTCTGTGTTCGGGGCTGAGCTGAGCCATGCTTTGCTGTAGAGCCTGTTGGTAGTGCAAGTGCATCAGGTC
GGGGCCAGGGTGAGCGATAT

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MTQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRLAGARK
VAQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARAAGVSLILVPPAYTS
QTCHKCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG

Sequences:

>Translated_397_residues
MTQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRLAGARK
VAQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARAAGVSLILVPPAYTS
QTCHKCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG
>Mature_396_residues
TQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRLAGARKV
AQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICVE
AEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRFQ
AWVNHRISKAIVSRAKTTNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARAAGVSLILVPPAYTSQ
TCHKCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=258, Percent_Identity=28.2945736434109, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44706; Mature: 44574

Theoretical pI: Translated: 11.11; Mature: 11.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCEEEECEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVAQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEHHHEEEEECCCEEEEEEEECC
RERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRIRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARAAGVSLILVPPAYTSQTCHKCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCH
VIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECC
>Mature Secondary Structure 
TQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCEEEECEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVAQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEHHHEEEEECCCEEEEEEEECC
RERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRIRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARAAGVSLILVPPAYTSQTCHKCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCH
VIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]