Click here to switch to the map view.

The map label for this gene is ydcU [H]

Identifier: 86607733

GI number: 86607733

Start: 243545

End: 244477

Strand: Direct

Name: ydcU [H]

Synonym: CYB_0234

Alternate gene names: 86607733

Gene position: 243545-244477 (Clockwise)

Preceding gene: 86607731

Following gene: 86607734

Centisome position: 7.99

GC content: 52.41

Gene sequence:

>933_bases
ATGGCCAAAACAACTCAGATAACCGATAAACCCGATCTGTTTGGATTCCTCTATCATCACCCGACGCTCATCCTTGCCAT
TCTGTTGGGGCCACCTCTCATTTGGTTACTGGTCTTTTACTTGGGGCCGCTGCTGGCGCTGCTGCTGCAAAGTTTTTATC
ATCTGGATCCCTTTACCGGCCTGATCCTGAGAAAGTTGACTTTGGCCACCTATCGGGAGCTGCTCACTCCTGCCAGCGTG
GATATCTTTGTCCGCAGCTTGACTATGGCTTTGGCAGTGACCCTAGCTGCAATTGTGTTGGCTTTTCCTCTGGCTTATAC
CATGGTCAGACTGGCCTCTCCTCGCTGGAAGGACTTTTTGTACTTGTTGGTGCTCCTACCGCTTTGGTCTAGTTATTTGA
TTCGGGTTTATGCCTGGAAGTTGATCCTGGCCAAAGAAGGGATCCTTACCTATCTACTCACCCATGTGGGCCTACAGGGC
TGGGTGGAAAAGATTTTGCAGTTGCCCGGGATCGGTGGGCCATCGCTGGCTGTATCCAACTTGGGTATTTTCTTGGTGTT
TCTCTATGTTTGGCTGCCCTATATGATTCTGCCGATCCAGGCGGCTTTGGAGCGAGTGCCTGATAGCTTAATTGAGGCTT
CTGCAGATTTGGGAGCTCAGGGTTGGCAAACGTTCCGCCATGTTACTCTTCCCCTCGCCTTGCCAGGGATCCTGGCCGGG
TCGGTCTTTACCTTTTCCTTAACGCTAGGAGATTTTGTGGTGCCTTATTCTCTGGGCAATTCCAGCTATTTCATCGGGCA
GGCAGTTCTCGCCTTTCAGGGCACCTCTGGCAACATTCCCTCGGCGGCAGCCTTCACGGTTGTGCCGATGGGGATCATGA
CCGTCTATCTGCTAGTGGCCAAGCGGCTGGGGGCTTTTGAATCGGTGAGCTGA

Upstream 100 bases:

>100_bases
CTCAATCCCAATTCTGTTGAATTCTATTGGCTCGTCGACCTACAATTCCAATAACACCAAAAAGAGGGAATGAAAAGCTG
ATCTTCATGCCTGCCTGGCC

Downstream 100 bases:

>100_bases
CCCGATCAAGGATTTTTCCAACACATGAGGAGCCAACTGAGCTAGGCTGGTAAGTGTTAACGAATGTATCGGGCTGTCCC
TATGGTGCTCTTTGGCTTTG

Product: polyamine/opine/phosphonate ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MAKTTQITDKPDLFGFLYHHPTLILAILLGPPLIWLLVFYLGPLLALLLQSFYHLDPFTGLILRKLTLATYRELLTPASV
DIFVRSLTMALAVTLAAIVLAFPLAYTMVRLASPRWKDFLYLLVLLPLWSSYLIRVYAWKLILAKEGILTYLLTHVGLQG
WVEKILQLPGIGGPSLAVSNLGIFLVFLYVWLPYMILPIQAALERVPDSLIEASADLGAQGWQTFRHVTLPLALPGILAG
SVFTFSLTLGDFVVPYSLGNSSYFIGQAVLAFQGTSGNIPSAAAFTVVPMGIMTVYLLVAKRLGAFESVS

Sequences:

>Translated_310_residues
MAKTTQITDKPDLFGFLYHHPTLILAILLGPPLIWLLVFYLGPLLALLLQSFYHLDPFTGLILRKLTLATYRELLTPASV
DIFVRSLTMALAVTLAAIVLAFPLAYTMVRLASPRWKDFLYLLVLLPLWSSYLIRVYAWKLILAKEGILTYLLTHVGLQG
WVEKILQLPGIGGPSLAVSNLGIFLVFLYVWLPYMILPIQAALERVPDSLIEASADLGAQGWQTFRHVTLPLALPGILAG
SVFTFSLTLGDFVVPYSLGNSSYFIGQAVLAFQGTSGNIPSAAAFTVVPMGIMTVYLLVAKRLGAFESVS
>Mature_309_residues
AKTTQITDKPDLFGFLYHHPTLILAILLGPPLIWLLVFYLGPLLALLLQSFYHLDPFTGLILRKLTLATYRELLTPASVD
IFVRSLTMALAVTLAAIVLAFPLAYTMVRLASPRWKDFLYLLVLLPLWSSYLIRVYAWKLILAKEGILTYLLTHVGLQGW
VEKILQLPGIGGPSLAVSNLGIFLVFLYVWLPYMILPIQAALERVPDSLIEASADLGAQGWQTFRHVTLPLALPGILAGS
VFTFSLTLGDFVVPYSLGNSSYFIGQAVLAFQGTSGNIPSAAAFTVVPMGIMTVYLLVAKRLGAFESVS

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787713, Length=295, Percent_Identity=54.9152542372881, Blast_Score=306, Evalue=1e-84,
Organism=Escherichia coli, GI1787080, Length=225, Percent_Identity=34.6666666666667, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1787369, Length=269, Percent_Identity=29.7397769516729, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34057; Mature: 33926

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTTQITDKPDLFGFLYHHPTLILAILLGPPLIWLLVFYLGPLLALLLQSFYHLDPFTG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LILRKLTLATYRELLTPASVDIFVRSLTMALAVTLAAIVLAFPLAYTMVRLASPRWKDFL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
YLLVLLPLWSSYLIRVYAWKLILAKEGILTYLLTHVGLQGWVEKILQLPGIGGPSLAVSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
LGIFLVFLYVWLPYMILPIQAALERVPDSLIEASADLGAQGWQTFRHVTLPLALPGILAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
SVFTFSLTLGDFVVPYSLGNSSYFIGQAVLAFQGTSGNIPSAAAFTVVPMGIMTVYLLVA
HHHHEEEHHHCEEEEEECCCCCHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
KRLGAFESVS
HHHCCCCCCC
>Mature Secondary Structure 
AKTTQITDKPDLFGFLYHHPTLILAILLGPPLIWLLVFYLGPLLALLLQSFYHLDPFTG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LILRKLTLATYRELLTPASVDIFVRSLTMALAVTLAAIVLAFPLAYTMVRLASPRWKDFL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
YLLVLLPLWSSYLIRVYAWKLILAKEGILTYLLTHVGLQGWVEKILQLPGIGGPSLAVSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
LGIFLVFLYVWLPYMILPIQAALERVPDSLIEASADLGAQGWQTFRHVTLPLALPGILAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
SVFTFSLTLGDFVVPYSLGNSSYFIGQAVLAFQGTSGNIPSAAAFTVVPMGIMTVYLLVA
HHHHEEEHHHCEEEEEECCCCCHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
KRLGAFESVS
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]