Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 86607589

GI number: 86607589

Start: 102812

End: 104029

Strand: Direct

Name: ydcM [C]

Synonym: CYB_0087

Alternate gene names: 86607589

Gene position: 102812-104029 (Clockwise)

Preceding gene: 86607587

Following gene: 86607590

Centisome position: 3.37

GC content: 54.11

Gene sequence:

>1218_bases
ATGAGCCAAGTCCTGACCATATCCTGTAAGCTCAAGGTGTCCCCGTCGCAAGCCGCCAAATTGGACGCGACGATGGATGC
CTTTGTACAGGCATTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAATCCCTTTGCT
ACTACGAGATTCGAGCCCGGTTTGGCTTGTCCAGTAACTTGGCAAGGACTACGTCCCGCTTACGCGACCAACAGGTGTGC
AGACGGGTAGCGGGTTCCCGCAAAGTGGCTAAGCAGAAAAAGCGTCCCGTCAAGGAGTTTAAGAGCGGCTTTGTTACCTA
CGACGCTCGCATCTTTTCGTTCCGTCAAAAAGACTGGACGGTGTCGCTGACCACGGTGGAAGGGAGAGAACGCTTTGAAC
TGGCCATTGGCAACTACCAGCGTGGGATGCTGGCTGGTTCCAACCCCAAATCTGCCACCCTGGTCAAGCGCAAAGATGGC
TCCTACTACATCCAGATTTGCGTAGAGAAAAAACCACCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGATTTGGG
AAGAATAGATATTGCTCATACCTCAGAGGGGAAGAACTGGAATGGACAGCAGTTAAACAAGGTACGAGACCACTACTCCC
GGTTGAGGGCGGTACTCCAACGCAAAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCCGTCAACTGCTGCAACGG
CTGTCTGGCAAGGAAAGACGCTTTCAAACGTGGGTCAATCATCGCATCTCTAAAGCTATTGTCTCTAGGGCAAAGACCAC
AAACAGCGCTATTGCCCTGGAAGACCTGACAGGGATCCGGGAAAGGGTCAATCAACAGCCACGCAGCAAAGCTGAGCGCC
GCAGAACCAATAACTGGGCGTTCTACCAGCTTAGGATGTTTGTGGTCTACAAGGCTGCCATCGCCGGAGTGTCTGTAGTA
CTGGTCCCGCCTGCCTACACGTCGCAGACCTGCCACCGGTGTTTGCACATCCATCCCGATCCTACGCAATCCTATCGCAG
TGGGAAGCAGTTTAAGTGTGGGCACTGTGGATGGGAAGGGGATGCGGACTGGAATGGAGCCAACATGATTGCTAAACTTG
GGGCTGCCGTAAACCGGCCTAGAGGTCCGTGGTTGGCTTGCCAACTGCAGGGCTACCGAAAGCCCGCCCTGTACTGCGAA
GTAGTCAGGGTCGGGTAG

Upstream 100 bases:

>100_bases
GCGCGATCCTGTCCCTTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCGGTGTCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
TTTACAAGTGACTTTAGCCGCCCGCAGCAGTGGGATGGAGTTTTTGCTCACGGATGAAGCTCCCCTGCTCTCGGTGGGGG
GAGTGTCCCGTTATTTGAAA

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSQVLTISCKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLARTTSRLRDQQVC
RRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDG
SYYIQICVEKKPPKQQDTDKVIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQR
LSGKERRFQTWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFVVYKAAIAGVSVV
LVPPAYTSQTCHRCLHIHPDPTQSYRSGKQFKCGHCGWEGDADWNGANMIAKLGAAVNRPRGPWLACQLQGYRKPALYCE
VVRVG

Sequences:

>Translated_405_residues
MSQVLTISCKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLARTTSRLRDQQVC
RRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDG
SYYIQICVEKKPPKQQDTDKVIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQR
LSGKERRFQTWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFVVYKAAIAGVSVV
LVPPAYTSQTCHRCLHIHPDPTQSYRSGKQFKCGHCGWEGDADWNGANMIAKLGAAVNRPRGPWLACQLQGYRKPALYCE
VVRVG
>Mature_404_residues
SQVLTISCKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLARTTSRLRDQQVCR
RVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGS
YYIQICVEKKPPKQQDTDKVIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRL
SGKERRFQTWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFVVYKAAIAGVSVVL
VPPAYTSQTCHRCLHIHPDPTQSYRSGKQFKCGHCGWEGDADWNGANMIAKLGAAVNRPRGPWLACQLQGYRKPALYCEV
VRVG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=241, Percent_Identity=27.3858921161826, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46079; Mature: 45947

Theoretical pI: Translated: 11.07; Mature: 11.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTISCKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRAR
CCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLARTTSRLRDQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWT
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCEEEEHHEEEEECCCEE
VSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVEKKPPKQQDTDK
EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCC
VIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQR
EEEEEECEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQTWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRSKAERRRTNNWA
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCEE
FYQLRMFVVYKAAIAGVSVVLVPPAYTSQTCHRCLHIHPDPTQSYRSGKQFKCGHCGWEG
HHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHEECCCCCCHHHHCCCCEECCCCCCCC
DADWNGANMIAKLGAAVNRPRGPWLACQLQGYRKPALYCEVVRVG
CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECC
>Mature Secondary Structure 
SQVLTISCKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRAR
CCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLARTTSRLRDQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWT
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCEEEEHHEEEEECCCEE
VSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVEKKPPKQQDTDK
EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCC
VIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQR
EEEEEECEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQTWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRSKAERRRTNNWA
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCEE
FYQLRMFVVYKAAIAGVSVVLVPPAYTSQTCHRCLHIHPDPTQSYRSGKQFKCGHCGWEG
HHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHEECCCCCCHHHHCCCCEECCCCCCCC
DADWNGANMIAKLGAAVNRPRGPWLACQLQGYRKPALYCEVVRVG
CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]