| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is yngK [H]
Identifier: 86607578
GI number: 86607578
Start: 87777
End: 90329
Strand: Direct
Name: yngK [H]
Synonym: CYB_0076
Alternate gene names: 86607578
Gene position: 87777-90329 (Clockwise)
Preceding gene: 86607577
Following gene: 86607580
Centisome position: 2.88
GC content: 61.93
Gene sequence:
>2553_bases ATGCTGTTGGCGGTTCGGTTCCCCAGTCCTTTGGCGGGACGGAGTCCTCAAGCAGGCTGGTCTGGGATGGTGAGGGATCG TTTCTGGGGCTTCATCTTAAGATCCTTCAAGCCCCTGGCAGTTTGTCTGGGTTTCCTCTGGGTGGGTCTGCTGGTTTGGA CGGGATCCCCGGTTGCCCACGGCCAAAGCGCTGTCCCCGCTGCGGAGCACTTTCTGACGGTGGTACGCTTGCCAGGGCAG AACTGGGCCAATATCGAGCGGCAACTGCAGCAGAGCGGCCTCAGCTACCAGGTGATCGACGGGATCGAGCCAGCAGGTTT GCGGGGGCGCAGCACAGTCTTTTTGCCAAACGTGAATCGCCTAACCGTTGCTCAAGCCCATGCTCTCGCCGAATGGATGC AACAGGAAGGGGGTCAGTTGATCGTCAGCGGCCCGCTGGAAATCCCTGCTGAGGCACGGGATCCCTTACGCAGCCTGATT GGCGCCTACTGGAGCGGAGATATTCCTCTGGCCAGTACGGTGCGCCTGACAGAGTTTGCTGAAGCATGGGCCCGCAGCGT TCAGGCGGCCGATCGCGCCAGCGGTGCGGAGCACTTTGTGGTTGCCGGGGGAGCCCTCTTGCCCACCGGCCCGGAAAGTC GTCTGGTGGCCGTCTGGGAAGAGGTGGACATGGGGGACAATGCCTATGCGGTGATTGCCAGCCGCCAGAGTGTGTACCTG GGTTGGCGTTGGGGGGAGTTTCCCGAGGAGACGGCGCAGTTGGATCGGGAGTGGTTGCAAGCGGCTCTGCGCCGGGCCCA AGGCCGTTTCGCTGCCCTCAGACAGGCTGCTGCCACCCCATCCCCTTTGCCAGCGGTGCGGAGCACCATCAACACCCTGG AGTTGCTGGCCATGCGCCAAGAGCTGGGGAGCTTGCTGGGTCGGGTAGAGGGATCCCTGTTGCTGGCTCGGGCCACTCAA GGGGGGGTAGAAGCAGCCGAGTACAAGCCCATTTTGGAGCAAGCCCGCAGCGTGTTGCAACAGCTACCGGCCTGGGTGGA GGCAGGGCAATACGAGCAGGCGCGGCAGGCTTTTGAACAGGCACGGGCGGATCTGTGGGCCCACTACCCGGTGGATCGGT TGACGGCTTTGTCTGAGGTACGGGCCATTTGGCTGGATCGGAGCACCATTGTCGAGGCAGGCTCTGAGGCAGGGCTGGCT CAGATTTTCGATCGCCTGGCTCAGGCTGGCCTCAACACCGTCTTTTTCGAGACGATGAATGCTGGCTTTGCCATTCATCC CAGCCGCGTCGCCCCCCAACAGAACCCCCTCACCCGTGGCCGGGATCCCTTGCGGGCGGCGGTGCGCTTGGCTCATGAGC GGGGCCTCGAATTGCACGCTTGGATTTGGACTCTTGCGGTGGGCAACACCCGCCACAATCTGCTGCCGGAGATCAACTTG CCCCAAGACTACATCGGCCCGGTGCTGACGGCTCACCCCGATTGGGCCAATCTGGACAATCGTGGCCGTCTGTTCCCGCG CGGGCAGCCGGAAACCTGGCTAGACCCAGCCAATCCGCAGGTGCGCAGCTATCTCCTGGCTCTTACCCGCGAGCTAGTGC AAGACTACCAGGTAGACGGGATCCACCTGGACTACATCCGCTATCCCTTCCAAAACGCTGCCAGCCGCCAGGTGTTTGGC TTCGGTCGGGCCGCTCGTCAGGGGTTTCAGCAGTTGTCCGGCGTCGATCCGCTGGAGTTGGATCCCTTGAGGGATCGCTC CCTCTGGCAGTTGTGGACCCGCTACCGCACCCAGCAGGTGAACGAGGTGGTGGAGGCCATTGCCCGCACCGCCCGCTCCC TCAACCCGCGCGTGATCCTCTCGGCAGCTGTCTATGCTCTGCCCAAGCAGGAGCGCCTGCAAAGGCTGCAGCAGAACTGG GAAGAGTGGATCCAGGCAGGGGAGCTGGATTTGTTGATCCCCCTCACCTATGCGGGCAATACACGGCGTTTGGCGCAACT GGTGCAGCCCAATTTGGAAATTGTCAGCCGCTTCTCCACCCTCTTCGTCCCCAGCCTTAATTTGTTGAACTTGCCGCCCG TCGAGTTCTTGGATCAACTGCAGGTGGTGCGGGATTTGCCCACCGGGGGGTTTGCTTTATTCTCGGTGCGGCAGCTTACC CCAGAGCTGGAAGCCATCCTCAGGTCCTCCGCCATTGCCTCGACTCGCATTCCCTATCGGGATCCCTTTGGGGCTGTTCG GGATCGCTTCCAGGCGCTGCGGCAGGAGTGGATGTTTTTGCTCGAGCAGAAACGGTTGGGGTTGTGGGAGCACAGCCAAT GGATGGAGCAAATAGAGCGGGTGCAGGGATCCCTGGCGGCCTTGGCAGCGGATCCCACCCCGGAAGCCCTGGAACAAGCC CGTCAGCAACTGGGCAACTTGAAAACCAATCTTGCCACTTGGATGCGGCTGGAATCTCTGCGCAACCCCTATCGAGTTCA AGTTTGGGGCAACCGTCTCGCGGCTTTGGAGATGATGCTGCGCTACGGAGAGCAAACCCTGATGAGGGCATGA
Upstream 100 bases:
>100_bases CACCAACATCATTGTTGAATTGAATAATGTTGAATGGTCTGGGCGGGTGCAGGTTCATATCCGCGCTCCTGACGGATGGT CTTCAAAGAAAGGAGATCCA
Downstream 100 bases:
>100_bases AGCTCCCCTCTTGCGGGATGGGGATCCCATCTATCCCCAGAACTTCCCCAGAACCGAAAAAAACTGTTATGGGGTATCTT TCGGCATTTCCTCTGCGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 850; Mature: 850
Protein sequence:
>850_residues MLLAVRFPSPLAGRSPQAGWSGMVRDRFWGFILRSFKPLAVCLGFLWVGLLVWTGSPVAHGQSAVPAAEHFLTVVRLPGQ NWANIERQLQQSGLSYQVIDGIEPAGLRGRSTVFLPNVNRLTVAQAHALAEWMQQEGGQLIVSGPLEIPAEARDPLRSLI GAYWSGDIPLASTVRLTEFAEAWARSVQAADRASGAEHFVVAGGALLPTGPESRLVAVWEEVDMGDNAYAVIASRQSVYL GWRWGEFPEETAQLDREWLQAALRRAQGRFAALRQAAATPSPLPAVRSTINTLELLAMRQELGSLLGRVEGSLLLARATQ GGVEAAEYKPILEQARSVLQQLPAWVEAGQYEQARQAFEQARADLWAHYPVDRLTALSEVRAIWLDRSTIVEAGSEAGLA QIFDRLAQAGLNTVFFETMNAGFAIHPSRVAPQQNPLTRGRDPLRAAVRLAHERGLELHAWIWTLAVGNTRHNLLPEINL PQDYIGPVLTAHPDWANLDNRGRLFPRGQPETWLDPANPQVRSYLLALTRELVQDYQVDGIHLDYIRYPFQNAASRQVFG FGRAARQGFQQLSGVDPLELDPLRDRSLWQLWTRYRTQQVNEVVEAIARTARSLNPRVILSAAVYALPKQERLQRLQQNW EEWIQAGELDLLIPLTYAGNTRRLAQLVQPNLEIVSRFSTLFVPSLNLLNLPPVEFLDQLQVVRDLPTGGFALFSVRQLT PELEAILRSSAIASTRIPYRDPFGAVRDRFQALRQEWMFLLEQKRLGLWEHSQWMEQIERVQGSLAALAADPTPEALEQA RQQLGNLKTNLATWMRLESLRNPYRVQVWGNRLAALEMMLRYGEQTLMRA
Sequences:
>Translated_850_residues MLLAVRFPSPLAGRSPQAGWSGMVRDRFWGFILRSFKPLAVCLGFLWVGLLVWTGSPVAHGQSAVPAAEHFLTVVRLPGQ NWANIERQLQQSGLSYQVIDGIEPAGLRGRSTVFLPNVNRLTVAQAHALAEWMQQEGGQLIVSGPLEIPAEARDPLRSLI GAYWSGDIPLASTVRLTEFAEAWARSVQAADRASGAEHFVVAGGALLPTGPESRLVAVWEEVDMGDNAYAVIASRQSVYL GWRWGEFPEETAQLDREWLQAALRRAQGRFAALRQAAATPSPLPAVRSTINTLELLAMRQELGSLLGRVEGSLLLARATQ GGVEAAEYKPILEQARSVLQQLPAWVEAGQYEQARQAFEQARADLWAHYPVDRLTALSEVRAIWLDRSTIVEAGSEAGLA QIFDRLAQAGLNTVFFETMNAGFAIHPSRVAPQQNPLTRGRDPLRAAVRLAHERGLELHAWIWTLAVGNTRHNLLPEINL PQDYIGPVLTAHPDWANLDNRGRLFPRGQPETWLDPANPQVRSYLLALTRELVQDYQVDGIHLDYIRYPFQNAASRQVFG FGRAARQGFQQLSGVDPLELDPLRDRSLWQLWTRYRTQQVNEVVEAIARTARSLNPRVILSAAVYALPKQERLQRLQQNW EEWIQAGELDLLIPLTYAGNTRRLAQLVQPNLEIVSRFSTLFVPSLNLLNLPPVEFLDQLQVVRDLPTGGFALFSVRQLT PELEAILRSSAIASTRIPYRDPFGAVRDRFQALRQEWMFLLEQKRLGLWEHSQWMEQIERVQGSLAALAADPTPEALEQA RQQLGNLKTNLATWMRLESLRNPYRVQVWGNRLAALEMMLRYGEQTLMRA >Mature_850_residues MLLAVRFPSPLAGRSPQAGWSGMVRDRFWGFILRSFKPLAVCLGFLWVGLLVWTGSPVAHGQSAVPAAEHFLTVVRLPGQ NWANIERQLQQSGLSYQVIDGIEPAGLRGRSTVFLPNVNRLTVAQAHALAEWMQQEGGQLIVSGPLEIPAEARDPLRSLI GAYWSGDIPLASTVRLTEFAEAWARSVQAADRASGAEHFVVAGGALLPTGPESRLVAVWEEVDMGDNAYAVIASRQSVYL GWRWGEFPEETAQLDREWLQAALRRAQGRFAALRQAAATPSPLPAVRSTINTLELLAMRQELGSLLGRVEGSLLLARATQ GGVEAAEYKPILEQARSVLQQLPAWVEAGQYEQARQAFEQARADLWAHYPVDRLTALSEVRAIWLDRSTIVEAGSEAGLA QIFDRLAQAGLNTVFFETMNAGFAIHPSRVAPQQNPLTRGRDPLRAAVRLAHERGLELHAWIWTLAVGNTRHNLLPEINL PQDYIGPVLTAHPDWANLDNRGRLFPRGQPETWLDPANPQVRSYLLALTRELVQDYQVDGIHLDYIRYPFQNAASRQVFG FGRAARQGFQQLSGVDPLELDPLRDRSLWQLWTRYRTQQVNEVVEAIARTARSLNPRVILSAAVYALPKQERLQRLQQNW EEWIQAGELDLLIPLTYAGNTRRLAQLVQPNLEIVSRFSTLFVPSLNLLNLPPVEFLDQLQVVRDLPTGGFALFSVRQLT PELEAILRSSAIASTRIPYRDPFGAVRDRFQALRQEWMFLLEQKRLGLWEHSQWMEQIERVQGSLAALAADPTPEALEQA RQQLGNLKTNLATWMRLESLRNPYRVQVWGNRLAALEMMLRYGEQTLMRA
Specific function: Unknown
COG id: COG1649
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Attached to the membrane by a lipid anchor (Potential) [C]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0748 family [H]
Homologues:
Organism=Escherichia coli, GI1787767, Length=286, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003790 - InterPro: IPR017853 [H]
Pfam domain/function: PF02638 DUF187 [H]
EC number: NA
Molecular weight: Translated: 95387; Mature: 95387
Theoretical pI: Translated: 7.47; Mature: 7.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLAVRFPSPLAGRSPQAGWSGMVRDRFWGFILRSFKPLAVCLGFLWVGLLVWTGSPVAH CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC GQSAVPAAEHFLTVVRLPGQNWANIERQLQQSGLSYQVIDGIEPAGLRGRSTVFLPNVNR CCCCCHHHHHHEEHEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCCH LTVAQAHALAEWMQQEGGQLIVSGPLEIPAEARDPLRSLIGAYWSGDIPLASTVRLTEFA HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH EAWARSVQAADRASGAEHFVVAGGALLPTGPESRLVAVWEEVDMGDNAYAVIASRQSVYL HHHHHHHHHHHHCCCCCEEEEECCEECCCCCCCCEEEEEHHHCCCCCCEEEEEECCEEEE GWRWGEFPEETAQLDREWLQAALRRAQGRFAALRQAAATPSPLPAVRSTINTLELLAMRQ EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH ELGSLLGRVEGSLLLARATQGGVEAAEYKPILEQARSVLQQLPAWVEAGQYEQARQAFEQ HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH ARADLWAHYPVDRLTALSEVRAIWLDRSTIVEAGSEAGLAQIFDRLAQAGLNTVFFETMN HHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHC AGFAIHPSRVAPQQNPLTRGRDPLRAAVRLAHERGLELHAWIWTLAVGNTRHNLLPEINL CCEEECCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHEECCCHHCCCCCCCC PQDYIGPVLTAHPDWANLDNRGRLFPRGQPETWLDPANPQVRSYLLALTRELVQDYQVDG CHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC IHLDYIRYPFQNAASRQVFGFGRAARQGFQQLSGVDPLELDPLRDRSLWQLWTRYRTQQV EEEHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH NEVVEAIARTARSLNPRVILSAAVYALPKQERLQRLQQNWEEWIQAGELDLLIPLTYAGN HHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC TRRLAQLVQPNLEIVSRFSTLFVPSLNLLNLPPVEFLDQLQVVRDLPTGGFALFSVRQLT HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHC PELEAILRSSAIASTRIPYRDPFGAVRDRFQALRQEWMFLLEQKRLGLWEHSQWMEQIER HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH VQGSLAALAADPTPEALEQARQQLGNLKTNLATWMRLESLRNPYRVQVWGNRLAALEMML HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH RYGEQTLMRA HHCHHHHHCC >Mature Secondary Structure MLLAVRFPSPLAGRSPQAGWSGMVRDRFWGFILRSFKPLAVCLGFLWVGLLVWTGSPVAH CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC GQSAVPAAEHFLTVVRLPGQNWANIERQLQQSGLSYQVIDGIEPAGLRGRSTVFLPNVNR CCCCCHHHHHHEEHEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCCH LTVAQAHALAEWMQQEGGQLIVSGPLEIPAEARDPLRSLIGAYWSGDIPLASTVRLTEFA HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH EAWARSVQAADRASGAEHFVVAGGALLPTGPESRLVAVWEEVDMGDNAYAVIASRQSVYL HHHHHHHHHHHHCCCCCEEEEECCEECCCCCCCCEEEEEHHHCCCCCCEEEEEECCEEEE GWRWGEFPEETAQLDREWLQAALRRAQGRFAALRQAAATPSPLPAVRSTINTLELLAMRQ EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH ELGSLLGRVEGSLLLARATQGGVEAAEYKPILEQARSVLQQLPAWVEAGQYEQARQAFEQ HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH ARADLWAHYPVDRLTALSEVRAIWLDRSTIVEAGSEAGLAQIFDRLAQAGLNTVFFETMN HHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHC AGFAIHPSRVAPQQNPLTRGRDPLRAAVRLAHERGLELHAWIWTLAVGNTRHNLLPEINL CCEEECCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHEECCCHHCCCCCCCC PQDYIGPVLTAHPDWANLDNRGRLFPRGQPETWLDPANPQVRSYLLALTRELVQDYQVDG CHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC IHLDYIRYPFQNAASRQVFGFGRAARQGFQQLSGVDPLELDPLRDRSLWQLWTRYRTQQV EEEHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH NEVVEAIARTARSLNPRVILSAAVYALPKQERLQRLQQNWEEWIQAGELDLLIPLTYAGN HHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC TRRLAQLVQPNLEIVSRFSTLFVPSLNLLNLPPVEFLDQLQVVRDLPTGGFALFSVRQLT HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHC PELEAILRSSAIASTRIPYRDPFGAVRDRFQALRQEWMFLLEQKRLGLWEHSQWMEQIER HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH VQGSLAALAADPTPEALEQARQQLGNLKTNLATWMRLESLRNPYRVQVWGNRLAALEMML HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH RYGEQTLMRA HHCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9387222; 9384377 [H]