| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606806
Identifier: 86606806
GI number: 86606806
Start: 2177856
End: 2180051
Strand: Reverse
Name: 86606806
Synonym: CYA_2166
Alternate gene names: NA
Gene position: 2180051-2177856 (Counterclockwise)
Preceding gene: 86606807
Following gene: 86606805
Centisome position: 74.33
GC content: 49.5
Gene sequence:
>2196_bases TTGCCAATGAGAATGCTTCAGCAGGAAGTTCCAGTTATCCTCAATCGCTTTCTTGTTAAGGAGCTAACTCAGGAAGACCT CACCTTTTATGAGTACGACTGTAGGCCAAACCCACCCCCGGAGCTAGGAGAAGAGCAGAGAGCTATCGCTAGGGTTTGCA ATCGGCTAGATGTAATAGCTGCTCGTTTGGGAAGTCGCATTATCACGCAGGAAAGAGTTTCGCCCAGCCAGCTCAAAACA CCAGAGTGGGAGTTGGAAGAGCGTGGGCTTAGGGTTCTAACCTGTGCCAATGCTCAAGAAAGAAGCGCCCTCGAAAGCTT TGAGCGCAAGAGGATAGGGTTGCGCCTTAAATCTCAGTACAAGAAAACTGAAGTCGAATGGATAGGAGGCGGCCTGCTCT GGTGGGTGACTGCTCAGAAAGGGGTAGAACTTTCCGGAGAAGGCTGGGAAATCCACAGAGGGAGAATGATAGATGTTGCC GTCGAACCAGACGGAAAGCTTTACTTAGAAGTCGATATTCATTACCGCTTCTACACGCCGTGGACTTTGCATGAATGGTT GGAAAGCTATCCGGACGTTCCAATCGAGATTGTGCGAAATACATACTTTGATGCGAACGGCAAACGTTTGACTTGGAAAT ATCTGGGTATTCTTTCTAACCAATCCCCACGGGAGATTCGGTTACCAGAGCAGAACATCAGTCTGGCGGAGTATCATTTG CAGAAGTACAATGCACTTGTAGAAGAAGTTGAGAGCTCTTGGGTAGTCGAAGTAGCATCAAAGGAAAGACGTTATCCCCA TCTCTCCCGAAGGTTATCGCCTGCTTTAACCTTGGAGATGCTAGCCAGTCTAGAAGACAACAGAAGCCCTGGCGGAAAAG TTAGCGCCGCTGTTATCGAGTGCATCAGAAAAAGTTTGAAAGAACGATTCGAAGAGTCCGAAGAGACTGCGAGGACCATT ATAAAGGAAGTCTACAAACTTTCCCCTGAGGAAATTAAGCCGCTAAAGACTCAAGGCTACATCCTGCCCAAGCCAAAGCT ATTGGGATCGGGTCGCAGACCAGTTGAAAATCCTGCTCGGGTTAGATACCGGGGATGTGCGAAGGTAGGCGAGACCAAGT TTGCATGTCTAAACCTCTATGACGACAAGCGAGAGTACCCTAGCGAAGTGCTCAACTGCTTGCTTGAGGTAGCCCAAAAA AGCGGCGCGGAAATTGAAGTAGACTTCTATGCCACTCAGCAAGACTTGCCTAAGGGCGATCTCGCCCGAAAAAGGTTCTG GCAAACCTGGGCTGAGCAAGGGATCAAAACGGTTTTGGTCGTTATGCCTTGGTCACCCAATGAGCGCAAGCAAAGGATCC GCATGGAGGCCCTTGAAGCAGGGATAGCGACTCAGTTTATGATCCCTGGGGCTGATCCATACAAGGCTCTAAACGTCGTC CTCGGGCTTCTGTGCAAGGCAGCGTGGCAGCCGGTACTCCTGGAACCCCTCGACGATCCTGTAGGCCCTGAGCTGATCAT CGGCTTCGATGTGGGAACCAATCGGCGGCTATACTACGGAGCCTCTGCTTTCGCTGTTCTGGCTGATGGGCAGAGCTTAG GTTGGGAGCTACCTGCTGTGCAGAGAGGAGAAACCTTCTCCGGGGACGCAATTTATCAAACTGTGTCCAAACTTGTCGAT AGGTTTTATGACAAGCTTAGCCGATATCCAAGCAAGGTTCTCTTGATGAGGGATGGTTTAGTTCAAGGAGGCGAATTTAG TAGAACAATTGAGGAGCTAGAAAAAGAAAAGATTGCTGTGGATATTGTTGGCATACGCAAAAGCGGTACAGGAAGAATGG GGATAGAAGAAGGAAAAGGTAAGTACAAAGATGCCAAAATAGGCACTGTTGTTTTCGACTACTCGCGAAAGTCGTTTACT CTAATAACAAGCCAGCCCATTAGAAAAGGTGGGAACTCCCTCGGCAGTGCAAGACCTCTGCGAGCGATCCACGAGCACGG CAAGACTCCCTTGGAAGTTCTGGCTTTACAAACCTATCACCTCTCTCAACTTCATCCTGCCAGTGGCTTCCAAGCCTGTA GGCTGCCCTGGGTGCTCCATTTTGCCGACAAAAGCGGCAAGGAGTTCCAGCGCCTTGGCGATAACATCTTCAGTATCCTG CAAAACATAGATCGCCAGAAATTGATTGCCGTCTAG
Upstream 100 bases:
>100_bases CTGGCTCCGCCCGAGTTGTTTCAGCTCTAACCTAGGGGGATCCCCAAGGCGCGATCGGGAAAATTAGGGCTTATTCTAGA GAGAAGCTTGAACTCAGAGG
Downstream 100 bases:
>100_bases CAGGGTAGGGGGTTCTTCCCTGTGGGCCCTGCTAGGATGGGGAAGGGTTTGAGATGCCAACTATGTTTACTCCCAACGAG GTCTGGAAGACCTTTCTGAG
Product: piwi domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 731; Mature: 730
Protein sequence:
>731_residues MPMRMLQQEVPVILNRFLVKELTQEDLTFYEYDCRPNPPPELGEEQRAIARVCNRLDVIAARLGSRIITQERVSPSQLKT PEWELEERGLRVLTCANAQERSALESFERKRIGLRLKSQYKKTEVEWIGGGLLWWVTAQKGVELSGEGWEIHRGRMIDVA VEPDGKLYLEVDIHYRFYTPWTLHEWLESYPDVPIEIVRNTYFDANGKRLTWKYLGILSNQSPREIRLPEQNISLAEYHL QKYNALVEEVESSWVVEVASKERRYPHLSRRLSPALTLEMLASLEDNRSPGGKVSAAVIECIRKSLKERFEESEETARTI IKEVYKLSPEEIKPLKTQGYILPKPKLLGSGRRPVENPARVRYRGCAKVGETKFACLNLYDDKREYPSEVLNCLLEVAQK SGAEIEVDFYATQQDLPKGDLARKRFWQTWAEQGIKTVLVVMPWSPNERKQRIRMEALEAGIATQFMIPGADPYKALNVV LGLLCKAAWQPVLLEPLDDPVGPELIIGFDVGTNRRLYYGASAFAVLADGQSLGWELPAVQRGETFSGDAIYQTVSKLVD RFYDKLSRYPSKVLLMRDGLVQGGEFSRTIEELEKEKIAVDIVGIRKSGTGRMGIEEGKGKYKDAKIGTVVFDYSRKSFT LITSQPIRKGGNSLGSARPLRAIHEHGKTPLEVLALQTYHLSQLHPASGFQACRLPWVLHFADKSGKEFQRLGDNIFSIL QNIDRQKLIAV
Sequences:
>Translated_731_residues MPMRMLQQEVPVILNRFLVKELTQEDLTFYEYDCRPNPPPELGEEQRAIARVCNRLDVIAARLGSRIITQERVSPSQLKT PEWELEERGLRVLTCANAQERSALESFERKRIGLRLKSQYKKTEVEWIGGGLLWWVTAQKGVELSGEGWEIHRGRMIDVA VEPDGKLYLEVDIHYRFYTPWTLHEWLESYPDVPIEIVRNTYFDANGKRLTWKYLGILSNQSPREIRLPEQNISLAEYHL QKYNALVEEVESSWVVEVASKERRYPHLSRRLSPALTLEMLASLEDNRSPGGKVSAAVIECIRKSLKERFEESEETARTI IKEVYKLSPEEIKPLKTQGYILPKPKLLGSGRRPVENPARVRYRGCAKVGETKFACLNLYDDKREYPSEVLNCLLEVAQK SGAEIEVDFYATQQDLPKGDLARKRFWQTWAEQGIKTVLVVMPWSPNERKQRIRMEALEAGIATQFMIPGADPYKALNVV LGLLCKAAWQPVLLEPLDDPVGPELIIGFDVGTNRRLYYGASAFAVLADGQSLGWELPAVQRGETFSGDAIYQTVSKLVD RFYDKLSRYPSKVLLMRDGLVQGGEFSRTIEELEKEKIAVDIVGIRKSGTGRMGIEEGKGKYKDAKIGTVVFDYSRKSFT LITSQPIRKGGNSLGSARPLRAIHEHGKTPLEVLALQTYHLSQLHPASGFQACRLPWVLHFADKSGKEFQRLGDNIFSIL QNIDRQKLIAV >Mature_730_residues PMRMLQQEVPVILNRFLVKELTQEDLTFYEYDCRPNPPPELGEEQRAIARVCNRLDVIAARLGSRIITQERVSPSQLKTP EWELEERGLRVLTCANAQERSALESFERKRIGLRLKSQYKKTEVEWIGGGLLWWVTAQKGVELSGEGWEIHRGRMIDVAV EPDGKLYLEVDIHYRFYTPWTLHEWLESYPDVPIEIVRNTYFDANGKRLTWKYLGILSNQSPREIRLPEQNISLAEYHLQ KYNALVEEVESSWVVEVASKERRYPHLSRRLSPALTLEMLASLEDNRSPGGKVSAAVIECIRKSLKERFEESEETARTII KEVYKLSPEEIKPLKTQGYILPKPKLLGSGRRPVENPARVRYRGCAKVGETKFACLNLYDDKREYPSEVLNCLLEVAQKS GAEIEVDFYATQQDLPKGDLARKRFWQTWAEQGIKTVLVVMPWSPNERKQRIRMEALEAGIATQFMIPGADPYKALNVVL GLLCKAAWQPVLLEPLDDPVGPELIIGFDVGTNRRLYYGASAFAVLADGQSLGWELPAVQRGETFSGDAIYQTVSKLVDR FYDKLSRYPSKVLLMRDGLVQGGEFSRTIEELEKEKIAVDIVGIRKSGTGRMGIEEGKGKYKDAKIGTVVFDYSRKSFTL ITSQPIRKGGNSLGSARPLRAIHEHGKTPLEVLALQTYHLSQLHPASGFQACRLPWVLHFADKSGKEFQRLGDNIFSILQ NIDRQKLIAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83278; Mature: 83147
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: PS00678 WD_REPEATS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMRMLQQEVPVILNRFLVKELTQEDLTFYEYDCRPNPPPELGEEQRAIARVCNRLDVIA CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH ARLGSRIITQERVSPSQLKTPEWELEERGLRVLTCANAQERSALESFERKRIGLRLKSQY HHHCCHHHHHHCCCHHHCCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHHCHHHHHHH KKTEVEWIGGGLLWWVTAQKGVELSGEGWEIHRGRMIDVAVEPDGKLYLEVDIHYRFYTP HHCCCEEECCCEEEEEEECCCCEECCCCEEEECCEEEEEEECCCCEEEEEEEEEEEEECC WTLHEWLESYPDVPIEIVRNTYFDANGKRLTWKYLGILSNQSPREIRLPEQNISLAEYHL HHHHHHHHHCCCCCHHHHHHCEECCCCCEEEEEEEEECCCCCCCEEECCCCCCHHHHHHH QKYNALVEEVESSWVVEVASKERRYPHLSRRLSPALTLEMLASLEDNRSPGGKVSAAVIE HHHHHHHHHHHHHHEEEEHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHH CIRKSLKERFEESEETARTIIKEVYKLSPEEIKPLKTQGYILPKPKLLGSGRRPVENPAR HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEECCCCHHCCCCCCCCCCCHH VRYRGCAKVGETKFACLNLYDDKREYPSEVLNCLLEVAQKSGAEIEVDFYATQQDLPKGD HHHHHHHHCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCH LARKRFWQTWAEQGIKTVLVVMPWSPNERKQRIRMEALEAGIATQFMIPGADPYKALNVV HHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH LGLLCKAAWQPVLLEPLDDPVGPELIIGFDVGTNRRLYYGASAFAVLADGQSLGWELPAV HHHHHHHCCCCEEECCCCCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCC QRGETFSGDAIYQTVSKLVDRFYDKLSRYPSKVLLMRDGLVQGGEFSRTIEELEKEKIAV CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCEEE DIVGIRKSGTGRMGIEEGKGKYKDAKIGTVVFDYSRKSFTLITSQPIRKGGNSLGSARPL EEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCHHHHCCCCCCCCHHH RAIHEHGKTPLEVLALQTYHLSQLHPASGFQACRLPWVLHFADKSGKEFQRLGDNIFSIL HHHHHCCCCCHHHHEEHHHHHHHCCCCCCCCHHCCCEEEEECCCCCHHHHHHHHHHHHHH QNIDRQKLIAV HCCCHHHHCCC >Mature Secondary Structure PMRMLQQEVPVILNRFLVKELTQEDLTFYEYDCRPNPPPELGEEQRAIARVCNRLDVIA CHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH ARLGSRIITQERVSPSQLKTPEWELEERGLRVLTCANAQERSALESFERKRIGLRLKSQY HHHCCHHHHHHCCCHHHCCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHHCHHHHHHH KKTEVEWIGGGLLWWVTAQKGVELSGEGWEIHRGRMIDVAVEPDGKLYLEVDIHYRFYTP HHCCCEEECCCEEEEEEECCCCEECCCCEEEECCEEEEEEECCCCEEEEEEEEEEEEECC WTLHEWLESYPDVPIEIVRNTYFDANGKRLTWKYLGILSNQSPREIRLPEQNISLAEYHL HHHHHHHHHCCCCCHHHHHHCEECCCCCEEEEEEEEECCCCCCCEEECCCCCCHHHHHHH QKYNALVEEVESSWVVEVASKERRYPHLSRRLSPALTLEMLASLEDNRSPGGKVSAAVIE HHHHHHHHHHHHHHEEEEHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHH CIRKSLKERFEESEETARTIIKEVYKLSPEEIKPLKTQGYILPKPKLLGSGRRPVENPAR HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEECCCCHHCCCCCCCCCCCHH VRYRGCAKVGETKFACLNLYDDKREYPSEVLNCLLEVAQKSGAEIEVDFYATQQDLPKGD HHHHHHHHCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCH LARKRFWQTWAEQGIKTVLVVMPWSPNERKQRIRMEALEAGIATQFMIPGADPYKALNVV HHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH LGLLCKAAWQPVLLEPLDDPVGPELIIGFDVGTNRRLYYGASAFAVLADGQSLGWELPAV HHHHHHHCCCCEEECCCCCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCC QRGETFSGDAIYQTVSKLVDRFYDKLSRYPSKVLLMRDGLVQGGEFSRTIEELEKEKIAV CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCEEE DIVGIRKSGTGRMGIEEGKGKYKDAKIGTVVFDYSRKSFTLITSQPIRKGGNSLGSARPL EEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCHHHHCCCCCCCCHHH RAIHEHGKTPLEVLALQTYHLSQLHPASGFQACRLPWVLHFADKSGKEFQRLGDNIFSIL HHHHHCCCCCHHHHEEHHHHHHHCCCCCCCCHHCCCEEEEECCCCCHHHHHHHHHHHHHH QNIDRQKLIAV HCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA