| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606733
Identifier: 86606733
GI number: 86606733
Start: 2109020
End: 2110315
Strand: Reverse
Name: 86606733
Synonym: CYA_2093
Alternate gene names: NA
Gene position: 2110315-2109020 (Counterclockwise)
Preceding gene: 86606736
Following gene: 86606732
Centisome position: 71.96
GC content: 55.17
Gene sequence:
>1296_bases ATGCTTCTAAAGCCAAAGTTAAACAAGGACGCTTATTTTAAAAAAACTGTCACCTCTGAAAGCCATCGCCTGAGGATCGA CAAGTTTTTAGTATCTTTTTTTACTTGCAAGTGTTTCTTTCTACGATACTCTTTCGGCTCTCCCTATGGTAGCGTTACAT CGCGATTTTGCCTTTTCTCTCGACCTTTTAACAGACCAGAAAACCGAGAAACTAGCTGGGTGATTGCCCTGATCCTGCTA GGGATCTCTATAGCCGGCTGTGGCTCTTCCAGTAGCACGGGGATCGACCCTGCTTCTTTGGGATCCCCAACTCGCCTGAC TTTCAATGGGGCTCTGACGCGCAATTTCAGCGGCACCCAGGGGGAGATGGAGTTCAACATTGCCCTTTTGCAAAGCGGGG ATCCGCCTCAGCCGGTCACCCAGCTTTCCCCTGCCCAGGTCAGCCTACAGGTTAACCGGGTAACCGATCTGCAGGGCATC CCGCAGTCAGCCACAGTAACCCTGAGCCCCACTCGCATCGAGAATCCTCGAGCGGAGCTGGCCCGTCAGCCTTTGCTGAT GGCCATTCTCATGGACGGCTCCGGCAGCCTGCTGGTTTTGGATCCCCAGTCCCGGCGCTTTTTGGCTGTTTTTGGGCTTT TGGATCAATTTCGCGCCACACCCCTGGATCTGGGGGCGGTGCTCCGCTTCGATAATCGAGGAGCTGGTTTTGGCGCTACC GCTCTCGGCCAGCCCTTGCGCACGGCCCAACTGCTGCAAGACTTCACCAGCGACAAGCAACTGCTGAGGCGGGGGGTACT GCGGGCAAATCCTGGTGGGAACACCGCCCTTTATGATGCCACGGTAGAAGCCGGGCGTTTCTTGAGCGACTTTCGGCCCA CCGAGCGTTTCAACCGCCGCTTGGTGGTATTCACCGATGGGATTGACAACGAAAGCACCCGCTCCATCAACCAAGCTAGT CAGGAGCTGACAACTTTGGCCAGAGAGCGAGGACAAAAACTCACCGTGTATGTGGTTGGGTTGGGGGTCGATTTGAATCT TCTGGAGTTACAGCGTCTGGCTGCAGCTACTGAGGGGACTTTTGTGCTGGCACGGTTTTCTGAAGGGCTGGAAGCTCCCT TTGCCAACTTATTCCCTGCTGCTATTGGGGAGCACCGCCTGCAGGTGAGGGTGCAAAGCAATGTTCCGCTATCTGCTGGT TCTTATCTTCTCAGTGGCGAGCTGAGAGTTGAGAGAGAAGGCAGCCGTTTTGTGGCGCCATTCAGCGACGCTGTTCTCAC GGTGGGATCCCGCTAG
Upstream 100 bases:
>100_bases TCTGCCCGCCTTCGGGAGAGGAGATGGGGGCAAAACTGGACTGCCAAGCTTTTTCTAGGCTGGCCGGCAAGCCTCTTGAA GCTCCCCAACCCCACGGGCC
Downstream 100 bases:
>100_bases AGTCATTCCGCAGGCTGACAACATCCCTAATCGAGAGCGAGGCGATAAGCAAATGTTTCGACGACTCGGTATACCCAGAA GATTTTGGCAACCGGCTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 431; Mature: 431
Protein sequence:
>431_residues MLLKPKLNKDAYFKKTVTSESHRLRIDKFLVSFFTCKCFFLRYSFGSPYGSVTSRFCLFSRPFNRPENRETSWVIALILL GISIAGCGSSSSTGIDPASLGSPTRLTFNGALTRNFSGTQGEMEFNIALLQSGDPPQPVTQLSPAQVSLQVNRVTDLQGI PQSATVTLSPTRIENPRAELARQPLLMAILMDGSGSLLVLDPQSRRFLAVFGLLDQFRATPLDLGAVLRFDNRGAGFGAT ALGQPLRTAQLLQDFTSDKQLLRRGVLRANPGGNTALYDATVEAGRFLSDFRPTERFNRRLVVFTDGIDNESTRSINQAS QELTTLARERGQKLTVYVVGLGVDLNLLELQRLAAATEGTFVLARFSEGLEAPFANLFPAAIGEHRLQVRVQSNVPLSAG SYLLSGELRVEREGSRFVAPFSDAVLTVGSR
Sequences:
>Translated_431_residues MLLKPKLNKDAYFKKTVTSESHRLRIDKFLVSFFTCKCFFLRYSFGSPYGSVTSRFCLFSRPFNRPENRETSWVIALILL GISIAGCGSSSSTGIDPASLGSPTRLTFNGALTRNFSGTQGEMEFNIALLQSGDPPQPVTQLSPAQVSLQVNRVTDLQGI PQSATVTLSPTRIENPRAELARQPLLMAILMDGSGSLLVLDPQSRRFLAVFGLLDQFRATPLDLGAVLRFDNRGAGFGAT ALGQPLRTAQLLQDFTSDKQLLRRGVLRANPGGNTALYDATVEAGRFLSDFRPTERFNRRLVVFTDGIDNESTRSINQAS QELTTLARERGQKLTVYVVGLGVDLNLLELQRLAAATEGTFVLARFSEGLEAPFANLFPAAIGEHRLQVRVQSNVPLSAG SYLLSGELRVEREGSRFVAPFSDAVLTVGSR >Mature_431_residues MLLKPKLNKDAYFKKTVTSESHRLRIDKFLVSFFTCKCFFLRYSFGSPYGSVTSRFCLFSRPFNRPENRETSWVIALILL GISIAGCGSSSSTGIDPASLGSPTRLTFNGALTRNFSGTQGEMEFNIALLQSGDPPQPVTQLSPAQVSLQVNRVTDLQGI PQSATVTLSPTRIENPRAELARQPLLMAILMDGSGSLLVLDPQSRRFLAVFGLLDQFRATPLDLGAVLRFDNRGAGFGAT ALGQPLRTAQLLQDFTSDKQLLRRGVLRANPGGNTALYDATVEAGRFLSDFRPTERFNRRLVVFTDGIDNESTRSINQAS QELTTLARERGQKLTVYVVGLGVDLNLLELQRLAAATEGTFVLARFSEGLEAPFANLFPAAIGEHRLQVRVQSNVPLSAG SYLLSGELRVEREGSRFVAPFSDAVLTVGSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47133; Mature: 47133
Theoretical pI: Translated: 10.02; Mature: 10.02
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLKPKLNKDAYFKKTVTSESHRLRIDKFLVSFFTCKCFFLRYSFGSPYGSVTSRFCLFS CCCCCCCCCCCCEEHHHCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHEEC RPFNRPENRETSWVIALILLGISIAGCGSSSSTGIDPASLGSPTRLTFNGALTRNFSGTQ CCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCHHHCCCCCEEEECCEEEECCCCCC GEMEFNIALLQSGDPPQPVTQLSPAQVSLQVNRVTDLQGIPQSATVTLSPTRIENPRAEL CCEEEEEEEEECCCCCCCHHCCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCCCCHHHH ARQPLLMAILMDGSGSLLVLDPQSRRFLAVFGLLDQFRATPLDLGAVLRFDNRGAGFGAT HCCCEEEEEEECCCCCEEEECCCCCEEHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHH ALGQPLRTAQLLQDFTSDKQLLRRGVLRANPGGNTALYDATVEAGRFLSDFRPTERFNRR HHCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEEECHHHHHHHHHHCCCHHHHCCE LVVFTDGIDNESTRSINQASQELTTLARERGQKLTVYVVGLGVDLNLLELQRLAAATEGT EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHCCCCC FVLARFSEGLEAPFANLFPAAIGEHRLQVRVQSNVPLSAGSYLLSGELRVEREGSRFVAP EEEEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEECEEEEEECCCEEECC FSDAVLTVGSR CCCEEEEECCC >Mature Secondary Structure MLLKPKLNKDAYFKKTVTSESHRLRIDKFLVSFFTCKCFFLRYSFGSPYGSVTSRFCLFS CCCCCCCCCCCCEEHHHCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHEEC RPFNRPENRETSWVIALILLGISIAGCGSSSSTGIDPASLGSPTRLTFNGALTRNFSGTQ CCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCHHHCCCCCEEEECCEEEECCCCCC GEMEFNIALLQSGDPPQPVTQLSPAQVSLQVNRVTDLQGIPQSATVTLSPTRIENPRAEL CCEEEEEEEEECCCCCCCHHCCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCCCCHHHH ARQPLLMAILMDGSGSLLVLDPQSRRFLAVFGLLDQFRATPLDLGAVLRFDNRGAGFGAT HCCCEEEEEEECCCCCEEEECCCCCEEHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHH ALGQPLRTAQLLQDFTSDKQLLRRGVLRANPGGNTALYDATVEAGRFLSDFRPTERFNRR HHCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEEECHHHHHHHHHHCCCHHHHCCE LVVFTDGIDNESTRSINQASQELTTLARERGQKLTVYVVGLGVDLNLLELQRLAAATEGT EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHCCCCC FVLARFSEGLEAPFANLFPAAIGEHRLQVRVQSNVPLSAGSYLLSGELRVEREGSRFVAP EEEEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEECEEEEEECCCEEECC FSDAVLTVGSR CCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA