| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606643
Identifier: 86606643
GI number: 86606643
Start: 2016332
End: 2017822
Strand: Reverse
Name: 86606643
Synonym: CYA_2000
Alternate gene names: NA
Gene position: 2017822-2016332 (Counterclockwise)
Preceding gene: 86606644
Following gene: 86606635
Centisome position: 68.8
GC content: 64.12
Gene sequence:
>1491_bases ATGTCTGCCTGGCCGGCACGTCGCTTCTATGCAGCTCTGCAGCGAGGGCTGACCCAGCCCCTGGATCGCTGGGTGGCCGG GATCACCCTCTGCAACTTGGCGGTTGGGGTGATCTTATTTTTGCTGGGCAACCACACGGCCCCCTATGTGCGGGACTTTA ACTGGCAACAGCAGCGGGTGGGATCCCAGGAACTGCAGATGGTGCTGACCTTCAACCGCCCTATGGATGCGGACAGCGTT GCGGCCAACCTGGAGATCCAGCCGCCTCTGCCGGGCCGGATGCGCAAGCTGGGCCGCCGCTTTTTTTGGACGCTGACAGA GCCGGCCCCCTACGGCCAGACCTACCGGGTGCGCCTGCAGGCAGCCGTGGATGAGCGGGGCCAGCCCATGGCGCGGCCTT TTGAGGGCGAGTTTCGCACGCCGGATCGGCAGTTGTTGGGGATCGGCACGGAAGCAGACCAACGGGGGCGGCTGTTGCTC TTTAACCTGGAGACGGGATCCACCACTTTGCTGACGCCGGCGGGGCTGAAGGTTACCCAGATGCAGCCCAGCGCCGATGG CCGCTTCGTCTACTACTTTGCCACCGCCAGCACCATCCAGCAGCAGGATCTCTACCGCCTGGATCTGGAGGATCTGTCTT CCCGGTTGCTGCTGGACCACCAGGGCTACCAAAACCTGCGCTTCCAGGTCTCGCCGACGGGGGAGCTGGTGGTAGCGGAG CGGATCCCCCTGCAACGGGATCCCCTGGCTCCCGTCCAGACGGAACTGTGGATCCAGAAAAGGAGCCGGGATCCCTTTGA GCGGCTGGATCTGGATACGGCTTTGGGGGGAGACTTTTTCATCAGCCCTGATGAGAGCAGCCTGCTCATCTCCCAGGGGC AGGGGGTGGGGATTGTGCCCTTGCAGCCGCGGGCGGCAGCGGAGAGCTTTTTGGCCCAGTTCGGCCAAACCTTGGCCATC CGTCCCGATGGGGCTTTCGGGGCTTTGCTGCGCTTCAATCCCGACTACACCCGCAGCCTCTTTATCGTCAGCAATACCGG CACCAGCGAGGAGATTTGGGTTACCGAGGGATCCGTAACCAAAGGAGCTTTTTCGCCGAGGGCACCCGTCTTTTACGGCT TGGTCAGCGAGGCCGAGTTTGTTGGTGAGGGCGCGTTGGCATCTCTGGCCTACACCGAGTCCCCCCGCTTGCTGGCAGTG GTGTTCGGCAGCGGCGGCGCGGCCCCGGCGGGCAAGACCGTAGAGGTGGGGCGGGCCGACTATCCCTTTGAGCTGGACTT CAGCCTTTCCCCTGACGGCCGCCTGTTGGCCTACACGCTTTTGGAGCCCTTGCAAGAGGAGATCCCGGATCCCTGGGCCC CCTTTAGCCGCACTGGGCAAGCGATCCGCAGCGGGCAAGTGTGGCTGGTGGACTTGCAAGATGGGCTGCCGATCCCCAAC AGCCGTCGCCGCCTGCCGCTGAGCAGCAGCGCACTGGCCTGGATCCCTTAG
Upstream 100 bases:
>100_bases TGACAACGGAAACGGACAGAATGCTATCGCTTCACCGCTGAGCAGTAATGCTCAGCAGTGTTCAGCGTAAATGTATCAGG TCGAAAACTGTACGACTCGG
Downstream 100 bases:
>100_bases TCAGGAGGAGTTCTAGGCAAGCAAGGCCTAAAACCCAGGCCAGATGCAGAGCAACTCCCCTCTCCCCCTAGCGAGCCGAG GTTCTCAGTTTGGTTAGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 496; Mature: 495
Protein sequence:
>496_residues MSAWPARRFYAALQRGLTQPLDRWVAGITLCNLAVGVILFLLGNHTAPYVRDFNWQQQRVGSQELQMVLTFNRPMDADSV AANLEIQPPLPGRMRKLGRRFFWTLTEPAPYGQTYRVRLQAAVDERGQPMARPFEGEFRTPDRQLLGIGTEADQRGRLLL FNLETGSTTLLTPAGLKVTQMQPSADGRFVYYFATASTIQQQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAE RIPLQRDPLAPVQTELWIQKRSRDPFERLDLDTALGGDFFISPDESSLLISQGQGVGIVPLQPRAAAESFLAQFGQTLAI RPDGAFGALLRFNPDYTRSLFIVSNTGTSEEIWVTEGSVTKGAFSPRAPVFYGLVSEAEFVGEGALASLAYTESPRLLAV VFGSGGAAPAGKTVEVGRADYPFELDFSLSPDGRLLAYTLLEPLQEEIPDPWAPFSRTGQAIRSGQVWLVDLQDGLPIPN SRRRLPLSSSALAWIP
Sequences:
>Translated_496_residues MSAWPARRFYAALQRGLTQPLDRWVAGITLCNLAVGVILFLLGNHTAPYVRDFNWQQQRVGSQELQMVLTFNRPMDADSV AANLEIQPPLPGRMRKLGRRFFWTLTEPAPYGQTYRVRLQAAVDERGQPMARPFEGEFRTPDRQLLGIGTEADQRGRLLL FNLETGSTTLLTPAGLKVTQMQPSADGRFVYYFATASTIQQQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAE RIPLQRDPLAPVQTELWIQKRSRDPFERLDLDTALGGDFFISPDESSLLISQGQGVGIVPLQPRAAAESFLAQFGQTLAI RPDGAFGALLRFNPDYTRSLFIVSNTGTSEEIWVTEGSVTKGAFSPRAPVFYGLVSEAEFVGEGALASLAYTESPRLLAV VFGSGGAAPAGKTVEVGRADYPFELDFSLSPDGRLLAYTLLEPLQEEIPDPWAPFSRTGQAIRSGQVWLVDLQDGLPIPN SRRRLPLSSSALAWIP >Mature_495_residues SAWPARRFYAALQRGLTQPLDRWVAGITLCNLAVGVILFLLGNHTAPYVRDFNWQQQRVGSQELQMVLTFNRPMDADSVA ANLEIQPPLPGRMRKLGRRFFWTLTEPAPYGQTYRVRLQAAVDERGQPMARPFEGEFRTPDRQLLGIGTEADQRGRLLLF NLETGSTTLLTPAGLKVTQMQPSADGRFVYYFATASTIQQQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAER IPLQRDPLAPVQTELWIQKRSRDPFERLDLDTALGGDFFISPDESSLLISQGQGVGIVPLQPRAAAESFLAQFGQTLAIR PDGAFGALLRFNPDYTRSLFIVSNTGTSEEIWVTEGSVTKGAFSPRAPVFYGLVSEAEFVGEGALASLAYTESPRLLAVV FGSGGAAPAGKTVEVGRADYPFELDFSLSPDGRLLAYTLLEPLQEEIPDPWAPFSRTGQAIRSGQVWLVDLQDGLPIPNS RRRLPLSSSALAWIP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54947; Mature: 54816
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAWPARRFYAALQRGLTQPLDRWVAGITLCNLAVGVILFLLGNHTAPYVRDFNWQQQRV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHC GSQELQMVLTFNRPMDADSVAANLEIQPPLPGRMRKLGRRFFWTLTEPAPYGQTYRVRLQ CCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHCCEEEEEECCCCCCCCEEEEEEE AAVDERGQPMARPFEGEFRTPDRQLLGIGTEADQRGRLLLFNLETGSTTLLTPAGLKVTQ EECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEE MQPSADGRFVYYFATASTIQQQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAE ECCCCCCCEEEEEEECCHHHHHHHEEECHHHHHHHEEEECCCCCCEEEEECCCCCEEEEE RIPLQRDPLAPVQTELWIQKRSRDPFERLDLDTALGGDFFISPDESSLLISQGQGVGIVP CCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCHHHCCCCEEECCCCCEEEEECCCCEEEEE LQPRAAAESFLAQFGQTLAIRPDGAFGALLRFNPDYTRSLFIVSNTGTSEEIWVTEGSVT CCCHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCC KGAFSPRAPVFYGLVSEAEFVGEGALASLAYTESPRLLAVVFGSGGAAPAGKTVEVGRAD CCCCCCCCCEEEEEHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEECCCCC YPFELDFSLSPDGRLLAYTLLEPLQEEIPDPWAPFSRTGQAIRSGQVWLVDLQDGLPIPN CCEEEEEEECCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCC SRRRLPLSSSALAWIP CCCCCCCCCCCEEECC >Mature Secondary Structure SAWPARRFYAALQRGLTQPLDRWVAGITLCNLAVGVILFLLGNHTAPYVRDFNWQQQRV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHC GSQELQMVLTFNRPMDADSVAANLEIQPPLPGRMRKLGRRFFWTLTEPAPYGQTYRVRLQ CCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHCCEEEEEECCCCCCCCEEEEEEE AAVDERGQPMARPFEGEFRTPDRQLLGIGTEADQRGRLLLFNLETGSTTLLTPAGLKVTQ EECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEE MQPSADGRFVYYFATASTIQQQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAE ECCCCCCCEEEEEEECCHHHHHHHEEECHHHHHHHEEEECCCCCCEEEEECCCCCEEEEE RIPLQRDPLAPVQTELWIQKRSRDPFERLDLDTALGGDFFISPDESSLLISQGQGVGIVP CCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCHHHCCCCEEECCCCCEEEEECCCCEEEEE LQPRAAAESFLAQFGQTLAIRPDGAFGALLRFNPDYTRSLFIVSNTGTSEEIWVTEGSVT CCCHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCC KGAFSPRAPVFYGLVSEAEFVGEGALASLAYTESPRLLAVVFGSGGAAPAGKTVEVGRAD CCCCCCCCCEEEEEHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEECCCCC YPFELDFSLSPDGRLLAYTLLEPLQEEIPDPWAPFSRTGQAIRSGQVWLVDLQDGLPIPN CCEEEEEEECCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCC SRRRLPLSSSALAWIP CCCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA