Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86606643

Identifier: 86606643

GI number: 86606643

Start: 2016332

End: 2017822

Strand: Reverse

Name: 86606643

Synonym: CYA_2000

Alternate gene names: NA

Gene position: 2017822-2016332 (Counterclockwise)

Preceding gene: 86606644

Following gene: 86606635

Centisome position: 68.8

GC content: 64.12

Gene sequence:

>1491_bases
ATGTCTGCCTGGCCGGCACGTCGCTTCTATGCAGCTCTGCAGCGAGGGCTGACCCAGCCCCTGGATCGCTGGGTGGCCGG
GATCACCCTCTGCAACTTGGCGGTTGGGGTGATCTTATTTTTGCTGGGCAACCACACGGCCCCCTATGTGCGGGACTTTA
ACTGGCAACAGCAGCGGGTGGGATCCCAGGAACTGCAGATGGTGCTGACCTTCAACCGCCCTATGGATGCGGACAGCGTT
GCGGCCAACCTGGAGATCCAGCCGCCTCTGCCGGGCCGGATGCGCAAGCTGGGCCGCCGCTTTTTTTGGACGCTGACAGA
GCCGGCCCCCTACGGCCAGACCTACCGGGTGCGCCTGCAGGCAGCCGTGGATGAGCGGGGCCAGCCCATGGCGCGGCCTT
TTGAGGGCGAGTTTCGCACGCCGGATCGGCAGTTGTTGGGGATCGGCACGGAAGCAGACCAACGGGGGCGGCTGTTGCTC
TTTAACCTGGAGACGGGATCCACCACTTTGCTGACGCCGGCGGGGCTGAAGGTTACCCAGATGCAGCCCAGCGCCGATGG
CCGCTTCGTCTACTACTTTGCCACCGCCAGCACCATCCAGCAGCAGGATCTCTACCGCCTGGATCTGGAGGATCTGTCTT
CCCGGTTGCTGCTGGACCACCAGGGCTACCAAAACCTGCGCTTCCAGGTCTCGCCGACGGGGGAGCTGGTGGTAGCGGAG
CGGATCCCCCTGCAACGGGATCCCCTGGCTCCCGTCCAGACGGAACTGTGGATCCAGAAAAGGAGCCGGGATCCCTTTGA
GCGGCTGGATCTGGATACGGCTTTGGGGGGAGACTTTTTCATCAGCCCTGATGAGAGCAGCCTGCTCATCTCCCAGGGGC
AGGGGGTGGGGATTGTGCCCTTGCAGCCGCGGGCGGCAGCGGAGAGCTTTTTGGCCCAGTTCGGCCAAACCTTGGCCATC
CGTCCCGATGGGGCTTTCGGGGCTTTGCTGCGCTTCAATCCCGACTACACCCGCAGCCTCTTTATCGTCAGCAATACCGG
CACCAGCGAGGAGATTTGGGTTACCGAGGGATCCGTAACCAAAGGAGCTTTTTCGCCGAGGGCACCCGTCTTTTACGGCT
TGGTCAGCGAGGCCGAGTTTGTTGGTGAGGGCGCGTTGGCATCTCTGGCCTACACCGAGTCCCCCCGCTTGCTGGCAGTG
GTGTTCGGCAGCGGCGGCGCGGCCCCGGCGGGCAAGACCGTAGAGGTGGGGCGGGCCGACTATCCCTTTGAGCTGGACTT
CAGCCTTTCCCCTGACGGCCGCCTGTTGGCCTACACGCTTTTGGAGCCCTTGCAAGAGGAGATCCCGGATCCCTGGGCCC
CCTTTAGCCGCACTGGGCAAGCGATCCGCAGCGGGCAAGTGTGGCTGGTGGACTTGCAAGATGGGCTGCCGATCCCCAAC
AGCCGTCGCCGCCTGCCGCTGAGCAGCAGCGCACTGGCCTGGATCCCTTAG

Upstream 100 bases:

>100_bases
TGACAACGGAAACGGACAGAATGCTATCGCTTCACCGCTGAGCAGTAATGCTCAGCAGTGTTCAGCGTAAATGTATCAGG
TCGAAAACTGTACGACTCGG

Downstream 100 bases:

>100_bases
TCAGGAGGAGTTCTAGGCAAGCAAGGCCTAAAACCCAGGCCAGATGCAGAGCAACTCCCCTCTCCCCCTAGCGAGCCGAG
GTTCTCAGTTTGGTTAGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 496; Mature: 495

Protein sequence:

>496_residues
MSAWPARRFYAALQRGLTQPLDRWVAGITLCNLAVGVILFLLGNHTAPYVRDFNWQQQRVGSQELQMVLTFNRPMDADSV
AANLEIQPPLPGRMRKLGRRFFWTLTEPAPYGQTYRVRLQAAVDERGQPMARPFEGEFRTPDRQLLGIGTEADQRGRLLL
FNLETGSTTLLTPAGLKVTQMQPSADGRFVYYFATASTIQQQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAE
RIPLQRDPLAPVQTELWIQKRSRDPFERLDLDTALGGDFFISPDESSLLISQGQGVGIVPLQPRAAAESFLAQFGQTLAI
RPDGAFGALLRFNPDYTRSLFIVSNTGTSEEIWVTEGSVTKGAFSPRAPVFYGLVSEAEFVGEGALASLAYTESPRLLAV
VFGSGGAAPAGKTVEVGRADYPFELDFSLSPDGRLLAYTLLEPLQEEIPDPWAPFSRTGQAIRSGQVWLVDLQDGLPIPN
SRRRLPLSSSALAWIP

Sequences:

>Translated_496_residues
MSAWPARRFYAALQRGLTQPLDRWVAGITLCNLAVGVILFLLGNHTAPYVRDFNWQQQRVGSQELQMVLTFNRPMDADSV
AANLEIQPPLPGRMRKLGRRFFWTLTEPAPYGQTYRVRLQAAVDERGQPMARPFEGEFRTPDRQLLGIGTEADQRGRLLL
FNLETGSTTLLTPAGLKVTQMQPSADGRFVYYFATASTIQQQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAE
RIPLQRDPLAPVQTELWIQKRSRDPFERLDLDTALGGDFFISPDESSLLISQGQGVGIVPLQPRAAAESFLAQFGQTLAI
RPDGAFGALLRFNPDYTRSLFIVSNTGTSEEIWVTEGSVTKGAFSPRAPVFYGLVSEAEFVGEGALASLAYTESPRLLAV
VFGSGGAAPAGKTVEVGRADYPFELDFSLSPDGRLLAYTLLEPLQEEIPDPWAPFSRTGQAIRSGQVWLVDLQDGLPIPN
SRRRLPLSSSALAWIP
>Mature_495_residues
SAWPARRFYAALQRGLTQPLDRWVAGITLCNLAVGVILFLLGNHTAPYVRDFNWQQQRVGSQELQMVLTFNRPMDADSVA
ANLEIQPPLPGRMRKLGRRFFWTLTEPAPYGQTYRVRLQAAVDERGQPMARPFEGEFRTPDRQLLGIGTEADQRGRLLLF
NLETGSTTLLTPAGLKVTQMQPSADGRFVYYFATASTIQQQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAER
IPLQRDPLAPVQTELWIQKRSRDPFERLDLDTALGGDFFISPDESSLLISQGQGVGIVPLQPRAAAESFLAQFGQTLAIR
PDGAFGALLRFNPDYTRSLFIVSNTGTSEEIWVTEGSVTKGAFSPRAPVFYGLVSEAEFVGEGALASLAYTESPRLLAVV
FGSGGAAPAGKTVEVGRADYPFELDFSLSPDGRLLAYTLLEPLQEEIPDPWAPFSRTGQAIRSGQVWLVDLQDGLPIPNS
RRRLPLSSSALAWIP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54947; Mature: 54816

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAWPARRFYAALQRGLTQPLDRWVAGITLCNLAVGVILFLLGNHTAPYVRDFNWQQQRV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHC
GSQELQMVLTFNRPMDADSVAANLEIQPPLPGRMRKLGRRFFWTLTEPAPYGQTYRVRLQ
CCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHCCEEEEEECCCCCCCCEEEEEEE
AAVDERGQPMARPFEGEFRTPDRQLLGIGTEADQRGRLLLFNLETGSTTLLTPAGLKVTQ
EECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEE
MQPSADGRFVYYFATASTIQQQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAE
ECCCCCCCEEEEEEECCHHHHHHHEEECHHHHHHHEEEECCCCCCEEEEECCCCCEEEEE
RIPLQRDPLAPVQTELWIQKRSRDPFERLDLDTALGGDFFISPDESSLLISQGQGVGIVP
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCHHHCCCCEEECCCCCEEEEECCCCEEEEE
LQPRAAAESFLAQFGQTLAIRPDGAFGALLRFNPDYTRSLFIVSNTGTSEEIWVTEGSVT
CCCHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCC
KGAFSPRAPVFYGLVSEAEFVGEGALASLAYTESPRLLAVVFGSGGAAPAGKTVEVGRAD
CCCCCCCCCEEEEEHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEECCCCC
YPFELDFSLSPDGRLLAYTLLEPLQEEIPDPWAPFSRTGQAIRSGQVWLVDLQDGLPIPN
CCEEEEEEECCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCC
SRRRLPLSSSALAWIP
CCCCCCCCCCCEEECC
>Mature Secondary Structure 
SAWPARRFYAALQRGLTQPLDRWVAGITLCNLAVGVILFLLGNHTAPYVRDFNWQQQRV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHC
GSQELQMVLTFNRPMDADSVAANLEIQPPLPGRMRKLGRRFFWTLTEPAPYGQTYRVRLQ
CCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHCCEEEEEECCCCCCCCEEEEEEE
AAVDERGQPMARPFEGEFRTPDRQLLGIGTEADQRGRLLLFNLETGSTTLLTPAGLKVTQ
EECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEE
MQPSADGRFVYYFATASTIQQQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAE
ECCCCCCCEEEEEEECCHHHHHHHEEECHHHHHHHEEEECCCCCCEEEEECCCCCEEEEE
RIPLQRDPLAPVQTELWIQKRSRDPFERLDLDTALGGDFFISPDESSLLISQGQGVGIVP
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCHHHCCCCEEECCCCCEEEEECCCCEEEEE
LQPRAAAESFLAQFGQTLAIRPDGAFGALLRFNPDYTRSLFIVSNTGTSEEIWVTEGSVT
CCCHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCC
KGAFSPRAPVFYGLVSEAEFVGEGALASLAYTESPRLLAVVFGSGGAAPAGKTVEVGRAD
CCCCCCCCCEEEEEHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEECCCCC
YPFELDFSLSPDGRLLAYTLLEPLQEEIPDPWAPFSRTGQAIRSGQVWLVDLQDGLPIPN
CCEEEEEEECCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCC
SRRRLPLSSSALAWIP
CCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA