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The map label for this gene is ydcM [C]

Identifier: 86606644

GI number: 86606644

Start: 2017853

End: 2019133

Strand: Reverse

Name: ydcM [C]

Synonym: CYA_2001

Alternate gene names: 86606644

Gene position: 2019133-2017853 (Counterclockwise)

Preceding gene: 86606645

Following gene: 86606643

Centisome position: 68.85

GC content: 55.5

Gene sequence:

>1281_bases
ATGACGATCACCTTTCTCCCCAACAGGAACTGGTTGAGGATATCCTCACCATCCTGCACTGCTTCAGCAGTCGGCTCTAC
GGACTCAGAAAATATCGGGCTGCAATCGAGAAAGATACGGATTTATCCGGAGCCAGCGCTGGCTAAAGTTTGGAAGCGGT
GGCAAGCGGCGTGCCGGTACTGCTACAACCAAGCGATTGCCTATCAGCGTCAGCATGGTGCCCCAAAAACGGCCAGAAAG
CTGCGGGACATCATCCTGCGCTCCGACCTGCCCGGGTGGGTGAAGGACGTCCCTTGCCACATCAAGCAGAACGCGGTCGT
CGAGGCGTGGCTGGCGTTTCGCCGAAGCAAAGACGCGAGGTTTCGCAGTGTGCGGGACAGGTCGCATACGCTGCAATTCA
ACGCCGGCAACTTTCGCAATGGGACGTGGTATCCGAAACTCACCCGAGGCTTGACGTTCCGTGCATCCGAGGAGATGCCC
AGAGAATGGGCACGTGGAACTGAGCTAATGCGGGTGAAAGACAGATGGTATGCCATCTTCCCTGAGCCCGTGAACGAGCA
GTGTTCGTTAGCAAAGGGGGTGATCGCACTTGATCCTGGAGTAAGAAGCTTCCTTACAGGGTTTGATGGGGCGGGCTTTG
TAGATATCGCCAAGGGAGACTTTGGCAGGATCGTTCGGCTGTGCTACCACCTAGACGATCTGCAGTCTAGGCTGAGTAAA
GCACCGAGACCCAAGCGTAGGCGAATGCGGCAAGCGGCGTTTCGTCTGCGGGAGAGAATCAGGAACTTGGTGGACGAGTG
CCATCGTAAGGTAGCAGCGTTCTTGACGGATAACTACCGATTGATATTCCTCCCCACTTTCGAGTCAGCCAAGATGGTTG
CCAAGGCAGGGAGGAAGTTTGGTAGCAAGACAGCAAGGGCGATGCTCACCTGGGCGCACTACCGGTTCAAGCAGCTCCTG
AAGTTTCAAGCCAAGAAGAAAAACGTGGTTGTCGTGGAAGTATCGGAAGCGTACACCAGCAAAACCTGTACCAAGTGCGG
GCACATCCACACCAAGTTGGGTGGCGCAAAGGTGTTTAGATGCCCAAAGTGCAACCATAGGCTACCACGAGATTGGCAAG
GCGCTCTGGGTGTTATGCTCAGGGCTTTGCGGGATACCGCCTTTCTGTTTGGACTCCGTCCGAGTAGCGCGGTCGCGTCA
GCATCGCGTAGTGACAACGGAAACGGACAGAATGCTATCGCTTCACCGCTGAGCAGTAATGCTCAGCAGTGTTCAGCGTA
A

Upstream 100 bases:

>100_bases
GGAACAATTGTGGTCGCTCACCGGGATCGACTCTGCCGGTTTGGATTTGAGTTCGTTGAGTGGTACTGCCGTCAATACGG
ATGCGAAATCTTGGTTCTCG

Downstream 100 bases:

>100_bases
ATGTATCAGGTCGAAAACTGTACGACTCGGATGTCTGCCTGGCCGGCACGTCGCTTCTATGCAGCTCTGCAGCGAGGGCT
GACCCAGCCCCTGGATCGCT

Product: ISSoc2, transposase

Products: NA

Alternate protein names: ISSoc2 Transposase

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MTITFLPNRNWLRISSPSCTASAVGSTDSENIGLQSRKIRIYPEPALAKVWKRWQAACRYCYNQAIAYQRQHGAPKTARK
LRDIILRSDLPGWVKDVPCHIKQNAVVEAWLAFRRSKDARFRSVRDRSHTLQFNAGNFRNGTWYPKLTRGLTFRASEEMP
REWARGTELMRVKDRWYAIFPEPVNEQCSLAKGVIALDPGVRSFLTGFDGAGFVDIAKGDFGRIVRLCYHLDDLQSRLSK
APRPKRRRMRQAAFRLRERIRNLVDECHRKVAAFLTDNYRLIFLPTFESAKMVAKAGRKFGSKTARAMLTWAHYRFKQLL
KFQAKKKNVVVVEVSEAYTSKTCTKCGHIHTKLGGAKVFRCPKCNHRLPRDWQGALGVMLRALRDTAFLFGLRPSSAVAS
ASRSDNGNGQNAIASPLSSNAQQCSA

Sequences:

>Translated_426_residues
MTITFLPNRNWLRISSPSCTASAVGSTDSENIGLQSRKIRIYPEPALAKVWKRWQAACRYCYNQAIAYQRQHGAPKTARK
LRDIILRSDLPGWVKDVPCHIKQNAVVEAWLAFRRSKDARFRSVRDRSHTLQFNAGNFRNGTWYPKLTRGLTFRASEEMP
REWARGTELMRVKDRWYAIFPEPVNEQCSLAKGVIALDPGVRSFLTGFDGAGFVDIAKGDFGRIVRLCYHLDDLQSRLSK
APRPKRRRMRQAAFRLRERIRNLVDECHRKVAAFLTDNYRLIFLPTFESAKMVAKAGRKFGSKTARAMLTWAHYRFKQLL
KFQAKKKNVVVVEVSEAYTSKTCTKCGHIHTKLGGAKVFRCPKCNHRLPRDWQGALGVMLRALRDTAFLFGLRPSSAVAS
ASRSDNGNGQNAIASPLSSNAQQCSA
>Mature_425_residues
TITFLPNRNWLRISSPSCTASAVGSTDSENIGLQSRKIRIYPEPALAKVWKRWQAACRYCYNQAIAYQRQHGAPKTARKL
RDIILRSDLPGWVKDVPCHIKQNAVVEAWLAFRRSKDARFRSVRDRSHTLQFNAGNFRNGTWYPKLTRGLTFRASEEMPR
EWARGTELMRVKDRWYAIFPEPVNEQCSLAKGVIALDPGVRSFLTGFDGAGFVDIAKGDFGRIVRLCYHLDDLQSRLSKA
PRPKRRRMRQAAFRLRERIRNLVDECHRKVAAFLTDNYRLIFLPTFESAKMVAKAGRKFGSKTARAMLTWAHYRFKQLLK
FQAKKKNVVVVEVSEAYTSKTCTKCGHIHTKLGGAKVFRCPKCNHRLPRDWQGALGVMLRALRDTAFLFGLRPSSAVASA
SRSDNGNGQNAIASPLSSNAQQCSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48428; Mature: 48297

Theoretical pI: Translated: 11.19; Mature: 11.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITFLPNRNWLRISSPSCTASAVGSTDSENIGLQSRKIRIYPEPALAKVWKRWQAACRY
CEEEEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
CYNQAIAYQRQHGAPKTARKLRDIILRSDLPGWVKDVPCHIKQNAVVEAWLAFRRSKDAR
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
FRSVRDRSHTLQFNAGNFRNGTWYPKLTRGLTFRASEEMPREWARGTELMRVKDRWYAIF
HHHHHCCCCEEEECCCCCCCCCCCCHHHCCEEEECCHHHHHHHHCCCCEEEEECCEEEEC
PEPVNEQCSLAKGVIALDPGVRSFLTGFDGAGFVDIAKGDFGRIVRLCYHLDDLQSRLSK
CCCCCCHHHHHCCEEEECCCHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
APRPKRRRMRQAAFRLRERIRNLVDECHRKVAAFLTDNYRLIFLPTFESAKMVAKAGRKF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHH
GSKTARAMLTWAHYRFKQLLKFQAKKKNVVVVEVSEAYTSKTCTKCGHIHTKLGGAKVFR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCHHHCCCCCEEEE
CPKCNHRLPRDWQGALGVMLRALRDTAFLFGLRPSSAVASASRSDNGNGQNAIASPLSSN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHCCCCCCCCCCHHHHCCHHCC
AQQCSA
HHHCCC
>Mature Secondary Structure 
TITFLPNRNWLRISSPSCTASAVGSTDSENIGLQSRKIRIYPEPALAKVWKRWQAACRY
EEEEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
CYNQAIAYQRQHGAPKTARKLRDIILRSDLPGWVKDVPCHIKQNAVVEAWLAFRRSKDAR
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
FRSVRDRSHTLQFNAGNFRNGTWYPKLTRGLTFRASEEMPREWARGTELMRVKDRWYAIF
HHHHHCCCCEEEECCCCCCCCCCCCHHHCCEEEECCHHHHHHHHCCCCEEEEECCEEEEC
PEPVNEQCSLAKGVIALDPGVRSFLTGFDGAGFVDIAKGDFGRIVRLCYHLDDLQSRLSK
CCCCCCHHHHHCCEEEECCCHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
APRPKRRRMRQAAFRLRERIRNLVDECHRKVAAFLTDNYRLIFLPTFESAKMVAKAGRKF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHH
GSKTARAMLTWAHYRFKQLLKFQAKKKNVVVVEVSEAYTSKTCTKCGHIHTKLGGAKVFR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCHHHCCCCCEEEE
CPKCNHRLPRDWQGALGVMLRALRDTAFLFGLRPSSAVASASRSDNGNGQNAIASPLSSN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHCCCCCCCCCCHHHHCCHHCC
AQQCSA
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA