| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606423
Identifier: 86606423
GI number: 86606423
Start: 1777016
End: 1777441
Strand: Reverse
Name: 86606423
Synonym: CYA_1769
Alternate gene names: NA
Gene position: 1777441-1777016 (Counterclockwise)
Preceding gene: 86606424
Following gene: 86606422
Centisome position: 60.61
GC content: 62.44
Gene sequence:
>426_bases ATGAGCCAAGCGCAGGATCCCTCCTTCTCCCCAGACATTCAAGCCCTGATCCAGGCGATGCAACGGCGGGATGTGCCCGC GGTAGCTCAGCAGGTCAACGGCCTCTCCCCTCAAGAGCGCCCCGCCGTGTTGACCCCTGCCCTTCGATACCTCGCTGGGG TGGATCCCGCCAGCGCCCAGTGGTTTGTTCGCCACCTCATGGCCCCTGCCGTCAAAGCGCAACTGCGAGAAGGGATCCTC AAAGCCGCCCAAGATTACCTGCAAGAGGCCGGCTTCCAAGAAGGGATCGATTACGAGCTCAAGCCCCATCCCCAATCGGG GGGTCAGATCTTAAGCCTTAGCCGCCGAGCCCTGCCCTATGCCGCCCCCGATGACGATCCCTTTGGGCAGTTGTTGCTGG CCGAGTTCTGCGAATTGCGGGACTAG
Upstream 100 bases:
>100_bases GAAAACTGGGCCATGTAACCGTCTGTCTGCCGACTGCTCCCTCTCCTTTCGAAGCAGCAGCCCTTGTTCGCACCCTCGAA TCCCTCTGGTACCCCCAGCC
Downstream 100 bases:
>100_bases ACCACCATGAGCGGTACGAGTTATCGGCTGCAGGTGCTCGACCTCACCGCCCTGCCCCAATTGCTGGAGCTGGATCGCCG CTGCTACGGCGGATACTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 141; Mature: 140
Protein sequence:
>141_residues MSQAQDPSFSPDIQALIQAMQRRDVPAVAQQVNGLSPQERPAVLTPALRYLAGVDPASAQWFVRHLMAPAVKAQLREGIL KAAQDYLQEAGFQEGIDYELKPHPQSGGQILSLSRRALPYAAPDDDPFGQLLLAEFCELRD
Sequences:
>Translated_141_residues MSQAQDPSFSPDIQALIQAMQRRDVPAVAQQVNGLSPQERPAVLTPALRYLAGVDPASAQWFVRHLMAPAVKAQLREGIL KAAQDYLQEAGFQEGIDYELKPHPQSGGQILSLSRRALPYAAPDDDPFGQLLLAEFCELRD >Mature_140_residues SQAQDPSFSPDIQALIQAMQRRDVPAVAQQVNGLSPQERPAVLTPALRYLAGVDPASAQWFVRHLMAPAVKAQLREGILK AAQDYLQEAGFQEGIDYELKPHPQSGGQILSLSRRALPYAAPDDDPFGQLLLAEFCELRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15495; Mature: 15364
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQAQDPSFSPDIQALIQAMQRRDVPAVAQQVNGLSPQERPAVLTPALRYLAGVDPASAQ CCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHH WFVRHLMAPAVKAQLREGILKAAQDYLQEAGFQEGIDYELKPHPQSGGQILSLSRRALPY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC AAPDDDPFGQLLLAEFCELRD CCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure SQAQDPSFSPDIQALIQAMQRRDVPAVAQQVNGLSPQERPAVLTPALRYLAGVDPASAQ CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHH WFVRHLMAPAVKAQLREGILKAAQDYLQEAGFQEGIDYELKPHPQSGGQILSLSRRALPY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC AAPDDDPFGQLLLAEFCELRD CCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA