| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
Click here to switch to the map view.
The map label for this gene is 86606415
Identifier: 86606415
GI number: 86606415
Start: 1765922
End: 1766704
Strand: Reverse
Name: 86606415
Synonym: CYA_1761
Alternate gene names: NA
Gene position: 1766704-1765922 (Counterclockwise)
Preceding gene: 86606416
Following gene: 86606413
Centisome position: 60.24
GC content: 61.17
Gene sequence:
>783_bases ATGAGGCCACTGCTGTACCTATTTTGGGCCGAGCTGAAGCGGGCCTGGATCCAGTACATCCGCTATCCGGCAGAAGCCCT GGGCGGGATCCTGATCACCACTTTTTTCTTCTATGCCCTCTTTGCCGGCGCTCAGTATGTGGCGGGGCCGGCCTCGCAGT TTGGACAACGGCTGGATGCGGTGGTGATTGGCTATGTGCTCTGGACGCTGGTCATTTTTGTGGTCAACGACATTGCCCTC AACCTGCAGGTGGAAGCCCAGACAGGCACCTTGGAGCAGGTGTTGCTCTCGCCCTTTTCGGCGGCCACCCTGTTTTTGGC GCGGGCCTGCGCCAGCTTGGTGCTGCGCTTTTCAACCGTTGTCGTTATCTTGGGGATCATCCTGTTGCTTACCGGCAGCC GGCTGCACTTTCCCCCCACCCTGTTGTTGCCGTTGGCGAGCGTGGTGCTGGGGGCCTATGGCTTCTCGTTTTTGCTGGGA TCCGCCGCCTTAATCTGGAAGCGCATTCAACAGCTGCTGATCCTGAGCCAGTTTGGCCTCCTCTTTCTCCTGGCTACCCC CACGGAGGAGTGGTCGGGATCCCTGAAGTGGCTGGGACAGATGCTGCCCATGACGGCGGGGGCCGGCTTGCTGCGAGATG TGATGGTGCGGGAGGCGGGTTTGGATCCCTTGCGGCTGCTCATGGCTCTGGCCAGCGGCGTGTTCTACTTCGCCTTGGGG CTGCTGGCCTTTCGCCGGGCGATGCAGCTAGCCAAACAGCGCGGCATCCTGGGATCCCAGTAG
Upstream 100 bases:
>100_bases TGGAGATCCTCAAGCCCTTGCCCTTGCTCAGGATCAAGCGCGAGGAAGCGGATCTCACCCACATTTTCCTCAAGCTGTTG AAAAGGAGAAGGGAGCAGGG
Downstream 100 bases:
>100_bases GACGTTGTCAGAGGGAGCGTCGGTCGCCAGGGGAGCGCAACAGGTGAGGGAAGTGGTACTCCACGGCGCCGGTGGTTAGG TTGTTCTCGGGGGAGGCGAT
Product: ABC-2 type transporter, permease protein
Products: NA
Alternate protein names: ABC-2 Type Transporter Superfamily; ABC Polysaccharide/Polyol Phosphate Transporter; ABC-2 Type Transporter Permease Protein; ABC-Type Transport System Permease Protein
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MRPLLYLFWAELKRAWIQYIRYPAEALGGILITTFFFYALFAGAQYVAGPASQFGQRLDAVVIGYVLWTLVIFVVNDIAL NLQVEAQTGTLEQVLLSPFSAATLFLARACASLVLRFSTVVVILGIILLLTGSRLHFPPTLLLPLASVVLGAYGFSFLLG SAALIWKRIQQLLILSQFGLLFLLATPTEEWSGSLKWLGQMLPMTAGAGLLRDVMVREAGLDPLRLLMALASGVFYFALG LLAFRRAMQLAKQRGILGSQ
Sequences:
>Translated_260_residues MRPLLYLFWAELKRAWIQYIRYPAEALGGILITTFFFYALFAGAQYVAGPASQFGQRLDAVVIGYVLWTLVIFVVNDIAL NLQVEAQTGTLEQVLLSPFSAATLFLARACASLVLRFSTVVVILGIILLLTGSRLHFPPTLLLPLASVVLGAYGFSFLLG SAALIWKRIQQLLILSQFGLLFLLATPTEEWSGSLKWLGQMLPMTAGAGLLRDVMVREAGLDPLRLLMALASGVFYFALG LLAFRRAMQLAKQRGILGSQ >Mature_260_residues MRPLLYLFWAELKRAWIQYIRYPAEALGGILITTFFFYALFAGAQYVAGPASQFGQRLDAVVIGYVLWTLVIFVVNDIAL NLQVEAQTGTLEQVLLSPFSAATLFLARACASLVLRFSTVVVILGIILLLTGSRLHFPPTLLLPLASVVLGAYGFSFLLG SAALIWKRIQQLLILSQFGLLFLLATPTEEWSGSLKWLGQMLPMTAGAGLLRDVMVREAGLDPLRLLMALASGVFYFALG LLAFRRAMQLAKQRGILGSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28545; Mature: 28545
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPLLYLFWAELKRAWIQYIRYPAEALGGILITTFFFYALFAGAQYVAGPASQFGQRLDA CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHH VVIGYVLWTLVIFVVNDIALNLQVEAQTGTLEQVLLSPFSAATLFLARACASLVLRFSTV HHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH VVILGIILLLTGSRLHFPPTLLLPLASVVLGAYGFSFLLGSAALIWKRIQQLLILSQFGL HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFLLATPTEEWSGSLKWLGQMLPMTAGAGLLRDVMVREAGLDPLRLLMALASGVFYFALG HHHHCCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LLAFRRAMQLAKQRGILGSQ HHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRPLLYLFWAELKRAWIQYIRYPAEALGGILITTFFFYALFAGAQYVAGPASQFGQRLDA CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHH VVIGYVLWTLVIFVVNDIALNLQVEAQTGTLEQVLLSPFSAATLFLARACASLVLRFSTV HHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH VVILGIILLLTGSRLHFPPTLLLPLASVVLGAYGFSFLLGSAALIWKRIQQLLILSQFGL HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFLLATPTEEWSGSLKWLGQMLPMTAGAGLLRDVMVREAGLDPLRLLMALASGVFYFALG HHHHCCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LLAFRRAMQLAKQRGILGSQ HHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA