| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606383
Identifier: 86606383
GI number: 86606383
Start: 1732498
End: 1733079
Strand: Reverse
Name: 86606383
Synonym: CYA_1728
Alternate gene names: NA
Gene position: 1733079-1732498 (Counterclockwise)
Preceding gene: 86606386
Following gene: 86606382
Centisome position: 59.09
GC content: 51.37
Gene sequence:
>582_bases ATGACCGTCGGAGCTGTGCCAACTCAGGGAAAAAGAGCTTGGACAGCCGAAGAATTCATGGCGTTGTCCAGGGAGGGACA TCGCTACGAGATTGTTGATGGGAAGCCAATTGATATGGGAAGCGCGGGGGCACTCCATGGTTATGTCTGCAGCCTCCTAT TGGCAGCTTTGACCCCCTACGTTTTGTCCAACAAGCTGGGGATCGTTTTAGATTCCAGCACTGCTTTTAAGATGAAGAGT GGAAATTGGCGCTCCCCTGACATCTCTTTTTTTGCTAAAGAACGCTTGCAGGGCATGGCTGAACTGCCCACAGGATTTTT GGAAGGCGCTCCAGATCTGGCTGTTGAAGTGCTTTCCCCCCGCAATACGGTTGAAGAAATTCATGACAAGCTGGTGGAGT ACTTTGAAAATGGCAGCCGCCTGGTTTGGCTGGTTCACCCCAGCGAGCACTACGTCCTGGTGTATCGCAGCTCTCAAGAG CCTGACCGCCTCCTGAAATCGGTTGATCTTCTAGAAGGTGAAGAGGTTATTCCAGGATTTGCCCTGCCGGTGGCTCATCT ATTCCAGAAGCTTTCCTTGTAA
Upstream 100 bases:
>100_bases AAGCCATTTTAGCCTTTGGCGTCCCCCCTCGAGGAAAAGCCGCTGGGGGATCCCTGCGGGCTTGGCTTGCGGTGTCGAAG GAGCAGCAAGGAGTTTGCAG
Downstream 100 bases:
>100_bases CATCCCCCCGCCCTCACTCTAGCCAATAGACCTCCTCCTGAGAAGACCTCGGCCCCAAACACCGCTTCCGAGTTCAACTG GCAGGGATCCCTCAAGTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MTVGAVPTQGKRAWTAEEFMALSREGHRYEIVDGKPIDMGSAGALHGYVCSLLLAALTPYVLSNKLGIVLDSSTAFKMKS GNWRSPDISFFAKERLQGMAELPTGFLEGAPDLAVEVLSPRNTVEEIHDKLVEYFENGSRLVWLVHPSEHYVLVYRSSQE PDRLLKSVDLLEGEEVIPGFALPVAHLFQKLSL
Sequences:
>Translated_193_residues MTVGAVPTQGKRAWTAEEFMALSREGHRYEIVDGKPIDMGSAGALHGYVCSLLLAALTPYVLSNKLGIVLDSSTAFKMKS GNWRSPDISFFAKERLQGMAELPTGFLEGAPDLAVEVLSPRNTVEEIHDKLVEYFENGSRLVWLVHPSEHYVLVYRSSQE PDRLLKSVDLLEGEEVIPGFALPVAHLFQKLSL >Mature_192_residues TVGAVPTQGKRAWTAEEFMALSREGHRYEIVDGKPIDMGSAGALHGYVCSLLLAALTPYVLSNKLGIVLDSSTAFKMKSG NWRSPDISFFAKERLQGMAELPTGFLEGAPDLAVEVLSPRNTVEEIHDKLVEYFENGSRLVWLVHPSEHYVLVYRSSQEP DRLLKSVDLLEGEEVIPGFALPVAHLFQKLSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21357; Mature: 21226
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVGAVPTQGKRAWTAEEFMALSREGHRYEIVDGKPIDMGSAGALHGYVCSLLLAALTPY CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH VLSNKLGIVLDSSTAFKMKSGNWRSPDISFFAKERLQGMAELPTGFLEGAPDLAVEVLSP HHCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCHHEEEECCC RNTVEEIHDKLVEYFENGSRLVWLVHPSEHYVLVYRSSQEPDRLLKSVDLLEGEEVIPGF CHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCH ALPVAHLFQKLSL HHHHHHHHHHHCC >Mature Secondary Structure TVGAVPTQGKRAWTAEEFMALSREGHRYEIVDGKPIDMGSAGALHGYVCSLLLAALTPY CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH VLSNKLGIVLDSSTAFKMKSGNWRSPDISFFAKERLQGMAELPTGFLEGAPDLAVEVLSP HHCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCHHEEEECCC RNTVEEIHDKLVEYFENGSRLVWLVHPSEHYVLVYRSSQEPDRLLKSVDLLEGEEVIPGF CHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCH ALPVAHLFQKLSL HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA