Click here to switch to the map view.

The map label for this gene is psbV

Identifier: 86606343

GI number: 86606343

Start: 1686058

End: 1686594

Strand: Reverse

Name: psbV

Synonym: CYA_1687

Alternate gene names: 86606343

Gene position: 1686594-1686058 (Counterclockwise)

Preceding gene: 86606347

Following gene: 86606342

Centisome position: 57.51

GC content: 56.05

Gene sequence:

>537_bases
ATGTTTAGCAAATTTTTTTCTCTTCAGAAAGCGTTCGCGGCGGCGCGTCGTCGGTTACTGATCCTGATCTTGGTTTTGGG
GATGGCCGGGTATGCCTGGGGGCCGGCCTTGGCGGCCAGGCAGATTCCTCCTGTAGCCTTGTCGCCAACCGAGTCCATCA
CTTTCACGGAAGCGCAACTGGCCAGAGGAAAGCAGTTATTCAACAGGGCCTGTGCCCAGTGTCATGTGGGTGGACAGACC
TATCCCAATCCGGATGTTACCTTGAAGCTCTCGGATCTGGAGGGGGCAACACCTCCCCGCGATAATGTGTTGGCGATCGT
GGACTACATCAAGAACCCGGTCACCTATGACGGGGTAGAGTCCCTGGTGGAATATCATCCCAACACCCAGCTTCTAAGTG
AGTATCCTCGCCTGCGCAACCTCACCGATGAGGATCTGAAGTTAATTGCCGGCTACATCCTAGTGCAGGCTAAGACCGTG
CCCGGCTGGGGCGGCACCAAGAGCGAATCCCACAGTGACCTTTCGGCCTATCTCTGA

Upstream 100 bases:

>100_bases
ATCTGCAAATGATCTCGCAATGGTCTATTCTTGATCCTGTTGTCGGGTTTGTCGCTGGAGCAGAGCTGACCCCTTTTCTA
AGATCGAACTACGGAGAACC

Downstream 100 bases:

>100_bases
TGCCTGGGCAAACTCAAGGGGCAAAGCGGTGGCGGGTCCCGGGCCGTGGCTGGAGGTGGGCCGGGATCCTGCTTCTGGTA
TGGCTAGGGCTAGCTAGCCC

Product: cytochrome c-550

Products: NA

Alternate protein names: Cytochrome c550; Low-potential cytochrome c

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MFSKFFSLQKAFAAARRRLLILILVLGMAGYAWGPALAARQIPPVALSPTESITFTEAQLARGKQLFNRACAQCHVGGQT
YPNPDVTLKLSDLEGATPPRDNVLAIVDYIKNPVTYDGVESLVEYHPNTQLLSEYPRLRNLTDEDLKLIAGYILVQAKTV
PGWGGTKSESHSDLSAYL

Sequences:

>Translated_178_residues
MFSKFFSLQKAFAAARRRLLILILVLGMAGYAWGPALAARQIPPVALSPTESITFTEAQLARGKQLFNRACAQCHVGGQT
YPNPDVTLKLSDLEGATPPRDNVLAIVDYIKNPVTYDGVESLVEYHPNTQLLSEYPRLRNLTDEDLKLIAGYILVQAKTV
PGWGGTKSESHSDLSAYL
>Mature_178_residues
MFSKFFSLQKAFAAARRRLLILILVLGMAGYAWGPALAARQIPPVALSPTESITFTEAQLARGKQLFNRACAQCHVGGQT
YPNPDVTLKLSDLEGATPPRDNVLAIVDYIKNPVTYDGVESLVEYHPNTQLLSEYPRLRNLTDEDLKLIAGYILVQAKTV
PGWGGTKSESHSDLSAYL

Specific function: Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side. Note=Associated with photosystem II at the lumenal side of the thylakoid membrane (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PsbV subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CY550_SYNJA (Q2JTY6)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_475106.1
- ProteinModelPortal:   Q2JTY6
- SMR:   Q2JTY6
- STRING:   Q2JTY6
- GeneID:   3897531
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_1687
- TIGR:   CYA_1687
- eggNOG:   NOG13404
- HOGENOM:   HBG285698
- OMA:   HVGGQTY
- ProtClustDB:   PRK13622
- BioCyc:   SSP321327:CYA_1687-MONOMER
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_01378
- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR016003
- InterPro:   IPR017851
- Gene3D:   G3DSA:1.10.760.10
- PIRSF:   PIRSF005890
- TIGRFAMs:   TIGR03045

Pfam domain/function: PF00034 Cytochrom_C; SSF46626 Cytochrome_c

EC number: NA

Molecular weight: Translated: 19536; Mature: 19536

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS51007 CYTC

Important sites: BINDING 71-71 BINDING 74-74

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSKFFSLQKAFAAARRRLLILILVLGMAGYAWGPALAARQIPPVALSPTESITFTEAQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEECCCCCEEEHHHHH
ARGKQLFNRACAQCHVGGQTYPNPDVTLKLSDLEGATPPRDNVLAIVDYIKNPVTYDGVE
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCEEHHHHHHCCCCCHHHHH
SLVEYHPNTQLLSEYPRLRNLTDEDLKLIAGYILVQAKTVPGWGGTKSESHSDLSAYL
HHHHHCCCHHHHHHCHHHCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MFSKFFSLQKAFAAARRRLLILILVLGMAGYAWGPALAARQIPPVALSPTESITFTEAQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEECCCCCEEEHHHHH
ARGKQLFNRACAQCHVGGQTYPNPDVTLKLSDLEGATPPRDNVLAIVDYIKNPVTYDGVE
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCEEHHHHHHCCCCCHHHHH
SLVEYHPNTQLLSEYPRLRNLTDEDLKLIAGYILVQAKTVPGWGGTKSESHSDLSAYL
HHHHHCCCHHHHHHCHHHCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA