| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606309
Identifier: 86606309
GI number: 86606309
Start: 1650093
End: 1650863
Strand: Reverse
Name: 86606309
Synonym: CYA_1653
Alternate gene names: NA
Gene position: 1650863-1650093 (Counterclockwise)
Preceding gene: 86606310
Following gene: 86606308
Centisome position: 56.29
GC content: 62.0
Gene sequence:
>771_bases TTGCCCCCCGCCACCTCTCTGCCTCCTGTGCAAGCCGAGCGACCGGCTTCTCAAGCAGCCAGCGTCCCCCAGGCTGAGGA AACCCTGCCCAAACTGGCCCCCTGGGGCAAACGGATCGGAGCCTTTGCCCTGGATTTTGGGCTGGGGCTGGGGGTCTCCT ACCTGGCGCAGGGCCTGGCTTCCCTGGTGGGAGCCGATGCGGGCGCCGTGGATATGACCGGCTACATCGCCTTTTTTGCC ACCTGGTTGGTGAACCGCGGCTACTTCCAATCCCGCCCCGCCGGCCAAAGCCTCGGCAAATGGCTGCTGAACCTCAAAAC CCTGGATCCCGAAACCGAGGCCTCACCCCATCTGGTGCGCTCCCTGGCCCGCGAAGGGGTGCTCTCGCTGTTTATCCTCA CGGAAGCCCTGCTGGTGCCTTTGGCTGCCGATGGCCTGTTCGCCCTTTTCGATAAAGAAAAACGCCAGAGCATCCACGAC CGCGCCGGACGCACCCTGGTGGTGGAATCGGAGCGAGGCTACCACCTGGATGAAAAAGCCCTGCGGCTGCTGCAGGAAAT TCTGGAGGGAGAAGCCGCCGAAGACGTCAAGTCCGCTGCTCGCGACCTGTTGCGCAAAGCTCAGCGCAACGAAACTGTGC GCGATCTTTCCAGACAGATGCAGCGCCTGAGCAGGGACGTGGATCGGAACACCCGCGCCCTCCGCCAACAAACCGGCAGG CAAGTCAAAAACTGGGTTGATTCCGTCAAAGAAAAGTTGGATAATTGGTGA
Upstream 100 bases:
>100_bases ACAGCCTCAACCTGCGATGACGGATCCCAGACCCTATCCCGAACGGCCCAAAACCGAGCAACTGGAGCAAAACGCCAGCG AGTGGCAGGCCTTCAGCGCC
Downstream 100 bases:
>100_bases TCGCGCTTGCGAGGTAGCCCATCTCCAACCTCGTTGGCTGGGGTTTTGGGGATCTCGAGCCGACTTTCACCTCCATCTTG GGATCCACTATGGCCAAAGC
Product: RDD family protein
Products: NA
Alternate protein names: RDD Family Protein; RDD Domain-Containing Protein
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MPPATSLPPVQAERPASQAASVPQAEETLPKLAPWGKRIGAFALDFGLGLGVSYLAQGLASLVGADAGAVDMTGYIAFFA TWLVNRGYFQSRPAGQSLGKWLLNLKTLDPETEASPHLVRSLAREGVLSLFILTEALLVPLAADGLFALFDKEKRQSIHD RAGRTLVVESERGYHLDEKALRLLQEILEGEAAEDVKSAARDLLRKAQRNETVRDLSRQMQRLSRDVDRNTRALRQQTGR QVKNWVDSVKEKLDNW
Sequences:
>Translated_256_residues MPPATSLPPVQAERPASQAASVPQAEETLPKLAPWGKRIGAFALDFGLGLGVSYLAQGLASLVGADAGAVDMTGYIAFFA TWLVNRGYFQSRPAGQSLGKWLLNLKTLDPETEASPHLVRSLAREGVLSLFILTEALLVPLAADGLFALFDKEKRQSIHD RAGRTLVVESERGYHLDEKALRLLQEILEGEAAEDVKSAARDLLRKAQRNETVRDLSRQMQRLSRDVDRNTRALRQQTGR QVKNWVDSVKEKLDNW >Mature_255_residues PPATSLPPVQAERPASQAASVPQAEETLPKLAPWGKRIGAFALDFGLGLGVSYLAQGLASLVGADAGAVDMTGYIAFFAT WLVNRGYFQSRPAGQSLGKWLLNLKTLDPETEASPHLVRSLAREGVLSLFILTEALLVPLAADGLFALFDKEKRQSIHDR AGRTLVVESERGYHLDEKALRLLQEILEGEAAEDVKSAARDLLRKAQRNETVRDLSRQMQRLSRDVDRNTRALRQQTGRQ VKNWVDSVKEKLDNW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28298; Mature: 28166
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPATSLPPVQAERPASQAASVPQAEETLPKLAPWGKRIGAFALDFGLGLGVSYLAQGLA CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHH SLVGADAGAVDMTGYIAFFATWLVNRGYFQSRPAGQSLGKWLLNLKTLDPETEASPHLVR HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHH SLAREGVLSLFILTEALLVPLAADGLFALFDKEKRQSIHDRAGRTLVVESERGYHLDEKA HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH LRLLQEILEGEAAEDVKSAARDLLRKAQRNETVRDLSRQMQRLSRDVDRNTRALRQQTGR HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVKNWVDSVKEKLDNW HHHHHHHHHHHHHCCC >Mature Secondary Structure PPATSLPPVQAERPASQAASVPQAEETLPKLAPWGKRIGAFALDFGLGLGVSYLAQGLA CCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHH SLVGADAGAVDMTGYIAFFATWLVNRGYFQSRPAGQSLGKWLLNLKTLDPETEASPHLVR HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHH SLAREGVLSLFILTEALLVPLAADGLFALFDKEKRQSIHDRAGRTLVVESERGYHLDEKA HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH LRLLQEILEGEAAEDVKSAARDLLRKAQRNETVRDLSRQMQRLSRDVDRNTRALRQQTGR HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVKNWVDSVKEKLDNW HHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA