Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86606008

Identifier: 86606008

GI number: 86606008

Start: 1346103

End: 1347674

Strand: Reverse

Name: 86606008

Synonym: CYA_1332

Alternate gene names: NA

Gene position: 1347674-1346103 (Counterclockwise)

Preceding gene: 86606009

Following gene: 86606007

Centisome position: 45.95

GC content: 59.41

Gene sequence:

>1572_bases
ATGGCCGATGCCCACCTGCCGCCGCTAATCCAAGCGATGTTGGATCCGGGGTTTTACCCCCATCCGGTGCGGGAGCCGAT
TCAGCTCGTCCAAACCCACATTTCCTACATTTTCTTGACAGGGAACTACGCCTATAAGGTGAAGAAGCCTCTGGATTTTG
GCTTTTTGAATTTCACCACCCTGGAGCGGCGACGCTACTTTTGTCAAGAAGAGCTGCGCCTGAACCAGCGCGGAGCGCCA
GGGCTTTATCTACAGGTGTTGCCCATTGTGCAAGCCGAGGGCCGGTTTCAGCTTGACGGCAGTGGCGAGCCCGTGGAGTA
CACCCTCAAAATGCGGCAGTTTCCTCAAGAGCAACTCTTTAGCAACCTCCTCGAGCGGGGGGAGCTGACGCCACTCTTAA
TGGAGGAGCTAGGACGGGTGGTGGCGGCCTTTCACGCCCAGGCGGAGACCAACGACTACATCCGCAGCTTTGGCCGGCCA
GAGCAGGTGCGGCAGGCTTTCGACGAGAATTACGCCCAAACCCAGCGCTACATTGGCGGCCCTCAGACGGCAGATCAATA
TCGGGAGACCCAAGCCTACACGGATCGCTTTTTTGCCGAGCGACAGGAGCTGTTTTACCAGAGAATTGAGCAAGACCGCA
TCCGCGAAGGCCACGGGGATCTGCATCTTGGCAACCTCTGTTGGTGGGAAGGCCAGATCTTGCTGTTTGATTGCATTGAG
TTCAACGAGGCCTTCCGCTTTGTGGATACGATGTACGACGTATCCTATGCAGTGATGGATCTGGATGCCCGCCATCGCCC
CGATCTGGGCAACGCCTATTTGAACAGCTATCTGGAAGAGACAGGCGATTGGGAAGGACTCAAGATCTTGCCCATTTACC
TCAATCGCCAGGCCTACGTGCGGGCCAAGGTCACCTCTTTTTTGCTAGACGATCCTGCCGCCTCGGAAGCTGCCAAAGCC
AATGCCTTCCACACTGCCGCCCGCTACTACCGACTGGCCTGGGAATACACGCTGCCCAAACAGGGGCAGTTGTTTCTGAT
GGCCGGCCTGTCGGGAGCGGGCAAAAGCACGGTGGCCCGCCACCTGGCCCGACAGCGAGGGGCCATCCACATCCGCTCCG
ACGCCGTGCGCAAGCATTTGGCTGGGATCCCTCTGCGGCAGCGAGGGGGGCCAGAGGTGTATACGCCCGAGATGACCGAC
AGGACTTATCGCCGCCTGGTGCAATTGGGAGTGGAGTTGGCCCGGGAAGGTTACAGCGTGATTCTGGACGCCAAGTTTGA
CCGGCAAGCGCTGCGGGGCATGGCAATTGAACAAGCCCAACGGTGCCGGATCCCGTTGTGCATCCTCTACTGCCACGCCC
CTGAACCTGTCCTCCGCGAGCGGCTGCAACGGCGAACGCTCCCTGCTTCGAGCCTGGGTGAGCCGCTGAACCTCGCCGAC
ATTGCCGATGCCACCGCCGATCTCCTTGCCCAGCAGCAGGCGCAGTGGCAGGATTTTTCCGAGGGGGAGCGGCGCTTGCT
GCAGGTTTTGGATACCAGCCAAGATTGGCAAGCGCAACTGCAGCAGATCTAG

Upstream 100 bases:

>100_bases
ATCCGTCTTTCACCGCAAGCGGCCGCCCTGCCCTTGGGAGACTAAGCTGAGGGCAATTTGGAGGAAAATGGGGATCCCTG
ACTTTTCCGTCTCCATCTTT

Downstream 100 bases:

>100_bases
GTCTCGACTCCAACTGACCAAGGTTACCGGCAAAGCGCATGCTGCCGTTTCCGGGTTAGAGGCTGACCGCAGCCCCTGCT
GATCTCAGGCGGCGGTCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 522

Protein sequence:

>523_residues
MADAHLPPLIQAMLDPGFYPHPVREPIQLVQTHISYIFLTGNYAYKVKKPLDFGFLNFTTLERRRYFCQEELRLNQRGAP
GLYLQVLPIVQAEGRFQLDGSGEPVEYTLKMRQFPQEQLFSNLLERGELTPLLMEELGRVVAAFHAQAETNDYIRSFGRP
EQVRQAFDENYAQTQRYIGGPQTADQYRETQAYTDRFFAERQELFYQRIEQDRIREGHGDLHLGNLCWWEGQILLFDCIE
FNEAFRFVDTMYDVSYAVMDLDARHRPDLGNAYLNSYLEETGDWEGLKILPIYLNRQAYVRAKVTSFLLDDPAASEAAKA
NAFHTAARYYRLAWEYTLPKQGQLFLMAGLSGAGKSTVARHLARQRGAIHIRSDAVRKHLAGIPLRQRGGPEVYTPEMTD
RTYRRLVQLGVELAREGYSVILDAKFDRQALRGMAIEQAQRCRIPLCILYCHAPEPVLRERLQRRTLPASSLGEPLNLAD
IADATADLLAQQQAQWQDFSEGERRLLQVLDTSQDWQAQLQQI

Sequences:

>Translated_523_residues
MADAHLPPLIQAMLDPGFYPHPVREPIQLVQTHISYIFLTGNYAYKVKKPLDFGFLNFTTLERRRYFCQEELRLNQRGAP
GLYLQVLPIVQAEGRFQLDGSGEPVEYTLKMRQFPQEQLFSNLLERGELTPLLMEELGRVVAAFHAQAETNDYIRSFGRP
EQVRQAFDENYAQTQRYIGGPQTADQYRETQAYTDRFFAERQELFYQRIEQDRIREGHGDLHLGNLCWWEGQILLFDCIE
FNEAFRFVDTMYDVSYAVMDLDARHRPDLGNAYLNSYLEETGDWEGLKILPIYLNRQAYVRAKVTSFLLDDPAASEAAKA
NAFHTAARYYRLAWEYTLPKQGQLFLMAGLSGAGKSTVARHLARQRGAIHIRSDAVRKHLAGIPLRQRGGPEVYTPEMTD
RTYRRLVQLGVELAREGYSVILDAKFDRQALRGMAIEQAQRCRIPLCILYCHAPEPVLRERLQRRTLPASSLGEPLNLAD
IADATADLLAQQQAQWQDFSEGERRLLQVLDTSQDWQAQLQQI
>Mature_522_residues
ADAHLPPLIQAMLDPGFYPHPVREPIQLVQTHISYIFLTGNYAYKVKKPLDFGFLNFTTLERRRYFCQEELRLNQRGAPG
LYLQVLPIVQAEGRFQLDGSGEPVEYTLKMRQFPQEQLFSNLLERGELTPLLMEELGRVVAAFHAQAETNDYIRSFGRPE
QVRQAFDENYAQTQRYIGGPQTADQYRETQAYTDRFFAERQELFYQRIEQDRIREGHGDLHLGNLCWWEGQILLFDCIEF
NEAFRFVDTMYDVSYAVMDLDARHRPDLGNAYLNSYLEETGDWEGLKILPIYLNRQAYVRAKVTSFLLDDPAASEAAKAN
AFHTAARYYRLAWEYTLPKQGQLFLMAGLSGAGKSTVARHLARQRGAIHIRSDAVRKHLAGIPLRQRGGPEVYTPEMTDR
TYRRLVQLGVELAREGYSVILDAKFDRQALRGMAIEQAQRCRIPLCILYCHAPEPVLRERLQRRTLPASSLGEPLNLADI
ADATADLLAQQQAQWQDFSEGERRLLQVLDTSQDWQAQLQQI

Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]

COG id: COG2187

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011009
- InterPro:   IPR010488 [H]

Pfam domain/function: PF06414 Zeta_toxin [H]

EC number: NA

Molecular weight: Translated: 60292; Mature: 60161

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADAHLPPLIQAMLDPGFYPHPVREPIQLVQTHISYIFLTGNYAYKVKKPLDFGFLNFTT
CCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEECCEEEEECCCCCCCCCCHHH
LERRRYFCQEELRLNQRGAPGLYLQVLPIVQAEGRFQLDGSGEPVEYTLKMRQFPQEQLF
HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEEEECCCCCCCEEEHHHHHCCHHHHH
SNLLERGELTPLLMEELGRVVAAFHAQAETNDYIRSFGRPEQVRQAFDENYAQTQRYIGG
HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
PQTADQYRETQAYTDRFFAERQELFYQRIEQDRIREGHGDLHLGNLCWWEGQILLFDCIE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCEEEEEHHH
FNEAFRFVDTMYDVSYAVMDLDARHRPDLGNAYLNSYLEETGDWEGLKILPIYLNRQAYV
HHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCHHH
RAKVTSFLLDDPAASEAAKANAFHTAARYYRLAWEYTLPKQGQLFLMAGLSGAGKSTVAR
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEECCCCCCHHHHHH
HLARQRGAIHIRSDAVRKHLAGIPLRQRGGPEVYTPEMTDRTYRRLVQLGVELAREGYSV
HHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE
ILDAKFDRQALRGMAIEQAQRCRIPLCILYCHAPEPVLRERLQRRTLPASSLGEPLNLAD
EEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCHHHCCCCCCHHH
IADATADLLAQQQAQWQDFSEGERRLLQVLDTSQDWQAQLQQI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure 
ADAHLPPLIQAMLDPGFYPHPVREPIQLVQTHISYIFLTGNYAYKVKKPLDFGFLNFTT
CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEECCEEEEECCCCCCCCCCHHH
LERRRYFCQEELRLNQRGAPGLYLQVLPIVQAEGRFQLDGSGEPVEYTLKMRQFPQEQLF
HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEEEECCCCCCCEEEHHHHHCCHHHHH
SNLLERGELTPLLMEELGRVVAAFHAQAETNDYIRSFGRPEQVRQAFDENYAQTQRYIGG
HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
PQTADQYRETQAYTDRFFAERQELFYQRIEQDRIREGHGDLHLGNLCWWEGQILLFDCIE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCEEEEEHHH
FNEAFRFVDTMYDVSYAVMDLDARHRPDLGNAYLNSYLEETGDWEGLKILPIYLNRQAYV
HHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCHHH
RAKVTSFLLDDPAASEAAKANAFHTAARYYRLAWEYTLPKQGQLFLMAGLSGAGKSTVAR
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEECCCCCCHHHHHH
HLARQRGAIHIRSDAVRKHLAGIPLRQRGGPEVYTPEMTDRTYRRLVQLGVELAREGYSV
HHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE
ILDAKFDRQALRGMAIEQAQRCRIPLCILYCHAPEPVLRERLQRRTLPASSLGEPLNLAD
EEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCHHHCCCCCCHHH
IADATADLLAQQQAQWQDFSEGERRLLQVLDTSQDWQAQLQQI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]