| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605794
Identifier: 86605794
GI number: 86605794
Start: 1131148
End: 1131801
Strand: Reverse
Name: 86605794
Synonym: CYA_1105
Alternate gene names: NA
Gene position: 1131801-1131148 (Counterclockwise)
Preceding gene: 86605795
Following gene: 86605793
Centisome position: 38.59
GC content: 55.5
Gene sequence:
>654_bases ATGGTTAGCCTACAAGCTCTTGTCCAGTCCATCCCCAAGCCTCGCCGCGGGATCCCAGAAGTAATTTGGATCCAAGCCAG CCGAGATCTAGCCCAAGGTCGATTTTGGCCCAGCCTATTTACCACCATCGGCTGCCTGAGCAACATTGCCTATACCTGCA CGCTTCCTTTTGTAACTGTTGGCATCATCGCGGGCACCACGTTAACTCGCCAAAGGGCAATTATTAGCGCTTCGATGATT TGGCTGGCCAACCAAATCTTTGGCTACACCTGGCACAACTATCCCCGTACACCTGATTCTTTTGCTTGGGGGTTGGTCTT GGGGATCGGCACGGTGGGGGTCGCTTTTGCTGCCGGCTACCGACCTCTGTTTTCTCAGTCCAAACCTATTAGGCCAAGGC AATTGCTGCTGAACTATCTTTGGATCCCAGCCATGCTGATCCTAGGGTTCCTTGCTTTTGAAGGGCTGATCTTGGCAGCC GGCCTGGTTCTGGGCGGAACGGAGGGCTTGACCCTGCCCATCTTGGCCAAGATCTGGCTGGACAACTGGCTGTGGACGGG ATTTTGGCTTGGGATCCACGCGCTGCTGGCGTGGGACAGAGGACGCCGGTTGTGGTGGGAGAGGGGAAACTTCGCTGATC TGGAGCATCCCTAA
Upstream 100 bases:
>100_bases GTACAAGCGGGTTACCCCCCAAGTAGCGCGGCAAATTGTCCAGGAGCATCTGCTAAAGAACTGCCCCTTGAAAGCTCACC TTTTTCCTGGAGATTAGCCT
Downstream 100 bases:
>100_bases GGGAGATCCAGGCCACAATGGGGGTGACCTGTGCCAGAAGGGATCCCTTTGCAGCCTGCTCAACTCGATTGTGGCGGGAG CGCTTTCCGCCTGTCTCTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 217; Mature: 217
Protein sequence:
>217_residues MVSLQALVQSIPKPRRGIPEVIWIQASRDLAQGRFWPSLFTTIGCLSNIAYTCTLPFVTVGIIAGTTLTRQRAIISASMI WLANQIFGYTWHNYPRTPDSFAWGLVLGIGTVGVAFAAGYRPLFSQSKPIRPRQLLLNYLWIPAMLILGFLAFEGLILAA GLVLGGTEGLTLPILAKIWLDNWLWTGFWLGIHALLAWDRGRRLWWERGNFADLEHP
Sequences:
>Translated_217_residues MVSLQALVQSIPKPRRGIPEVIWIQASRDLAQGRFWPSLFTTIGCLSNIAYTCTLPFVTVGIIAGTTLTRQRAIISASMI WLANQIFGYTWHNYPRTPDSFAWGLVLGIGTVGVAFAAGYRPLFSQSKPIRPRQLLLNYLWIPAMLILGFLAFEGLILAA GLVLGGTEGLTLPILAKIWLDNWLWTGFWLGIHALLAWDRGRRLWWERGNFADLEHP >Mature_217_residues MVSLQALVQSIPKPRRGIPEVIWIQASRDLAQGRFWPSLFTTIGCLSNIAYTCTLPFVTVGIIAGTTLTRQRAIISASMI WLANQIFGYTWHNYPRTPDSFAWGLVLGIGTVGVAFAAGYRPLFSQSKPIRPRQLLLNYLWIPAMLILGFLAFEGLILAA GLVLGGTEGLTLPILAKIWLDNWLWTGFWLGIHALLAWDRGRRLWWERGNFADLEHP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24332; Mature: 24332
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSLQALVQSIPKPRRGIPEVIWIQASRDLAQGRFWPSLFTTIGCLSNIAYTCTLPFVTV CCCHHHHHHHCCCCCCCCCCEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GIIAGTTLTRQRAIISASMIWLANQIFGYTWHNYPRTPDSFAWGLVLGIGTVGVAFAAGY HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC RPLFSQSKPIRPRQLLLNYLWIPAMLILGFLAFEGLILAAGLVLGGTEGLTLPILAKIWL CHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH DNWLWTGFWLGIHALLAWDRGRRLWWERGNFADLEHP HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC >Mature Secondary Structure MVSLQALVQSIPKPRRGIPEVIWIQASRDLAQGRFWPSLFTTIGCLSNIAYTCTLPFVTV CCCHHHHHHHCCCCCCCCCCEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GIIAGTTLTRQRAIISASMIWLANQIFGYTWHNYPRTPDSFAWGLVLGIGTVGVAFAAGY HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC RPLFSQSKPIRPRQLLLNYLWIPAMLILGFLAFEGLILAAGLVLGGTEGLTLPILAKIWL CHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH DNWLWTGFWLGIHALLAWDRGRRLWWERGNFADLEHP HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA