| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605795
Identifier: 86605795
GI number: 86605795
Start: 1131805
End: 1132674
Strand: Reverse
Name: 86605795
Synonym: CYA_1106
Alternate gene names: NA
Gene position: 1132674-1131805 (Counterclockwise)
Preceding gene: 86605796
Following gene: 86605794
Centisome position: 38.62
GC content: 57.24
Gene sequence:
>870_bases ATGGCCGCTTTCAGTCCCTGGATCACGCCCTTAAACCAGACTTGGCAAGAGGTTTCCCCCACCGGCTGGACAACCGTTTA CGAAGGGATCCCGGCTCACATCGACTGTCTTGGGCCATTGCTCTATGAGCTCTTTCAGGAGCGCTGGGCCGAGATCCAAG TGGGCCAGGTGGTGGAGGGAGGAGTGCTGGAGGCGGCCTTCAAGGATCCCCCTGCTCTCTGTGTGCTCTACGACGGCTAT TTGACCGTGGCCACCGAAACTTGGCATTTGCACCTGTGTCTAGAAGAGCACCAGGGCGGCCCCTACAGCAGAACTCCACC TGAGCTGCGCCGCAAAAGATTGGTCGGCCGCGCCGCCCTCTATCGCCGCCTCAATCCGCAGGGCCAGCCTCGCCAATGGG GGATCCAATTTTGGAACGGAGCAGAGGAATCGCTGCTGCAGATCTTTTTGCCCAGTCCCTTTTTGGGGCCAGGAGAAGAC TACCTGCCCGAAGGCAAAGCCGACTATCAGAAGCTCTCCCTTTATGAACGCCTGCGGGCCATTTACGTCGAGGGAAAAGA GCGGATCCCGTATGAAGATAACCCCCTCAAGCGGCCCTATTTGGCGGTTTGCCGTTCCAGCCGCTGCTATCCTTCTCGCC ACTATCAGCCCGTTGTGGAAGCTCTGCAATCGGCCCTGCGGGAAGCCAATTTGGATATTCAGGTCATTACTTCCGGATGC CTAGAAGTCTGTCAACAAGGGCCGGTGGTTTTTTACTCCGGAGATCGCACCTGGTACAAGCGGGTTACCCCCCAAGTAGC GCGGCAAATTGTCCAGGAGCATCTGCTAAAGAACTGCCCCTTGAAAGCTCACCTTTTTCCTGGAGATTAG
Upstream 100 bases:
>100_bases GCTGTATTTGACAAAGCCCGATGGGATCCTGCCCTGGGCAGAGCGCCCCATCAAAAAGGGGGTGATTGCCCGCATTCCGC CAATCCAATAGGAGCAACCT
Downstream 100 bases:
>100_bases CCTATGGTTAGCCTACAAGCTCTTGTCCAGTCCATCCCCAAGCCTCGCCGCGGGATCCCAGAAGTAATTTGGATCCAAGC CAGCCGAGATCTAGCCCAAG
Product: iron-sulfur cluster-binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MAAFSPWITPLNQTWQEVSPTGWTTVYEGIPAHIDCLGPLLYELFQERWAEIQVGQVVEGGVLEAAFKDPPALCVLYDGY LTVATETWHLHLCLEEHQGGPYSRTPPELRRKRLVGRAALYRRLNPQGQPRQWGIQFWNGAEESLLQIFLPSPFLGPGED YLPEGKADYQKLSLYERLRAIYVEGKERIPYEDNPLKRPYLAVCRSSRCYPSRHYQPVVEALQSALREANLDIQVITSGC LEVCQQGPVVFYSGDRTWYKRVTPQVARQIVQEHLLKNCPLKAHLFPGD
Sequences:
>Translated_289_residues MAAFSPWITPLNQTWQEVSPTGWTTVYEGIPAHIDCLGPLLYELFQERWAEIQVGQVVEGGVLEAAFKDPPALCVLYDGY LTVATETWHLHLCLEEHQGGPYSRTPPELRRKRLVGRAALYRRLNPQGQPRQWGIQFWNGAEESLLQIFLPSPFLGPGED YLPEGKADYQKLSLYERLRAIYVEGKERIPYEDNPLKRPYLAVCRSSRCYPSRHYQPVVEALQSALREANLDIQVITSGC LEVCQQGPVVFYSGDRTWYKRVTPQVARQIVQEHLLKNCPLKAHLFPGD >Mature_288_residues AAFSPWITPLNQTWQEVSPTGWTTVYEGIPAHIDCLGPLLYELFQERWAEIQVGQVVEGGVLEAAFKDPPALCVLYDGYL TVATETWHLHLCLEEHQGGPYSRTPPELRRKRLVGRAALYRRLNPQGQPRQWGIQFWNGAEESLLQIFLPSPFLGPGEDY LPEGKADYQKLSLYERLRAIYVEGKERIPYEDNPLKRPYLAVCRSSRCYPSRHYQPVVEALQSALREANLDIQVITSGCL EVCQQGPVVFYSGDRTWYKRVTPQVARQIVQEHLLKNCPLKAHLFPGD
Specific function: Unknown
COG id: COG3411
COG function: function code C; Ferredoxin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33052; Mature: 32921
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAFSPWITPLNQTWQEVSPTGWTTVYEGIPAHIDCLGPLLYELFQERWAEIQVGQVVEG CCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCEECCCCCCC GVLEAAFKDPPALCVLYDGYLTVATETWHLHLCLEEHQGGPYSRTPPELRRKRLVGRAAL CHHHHHHCCCCEEEEEECCEEEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH YRRLNPQGQPRQWGIQFWNGAEESLLQIFLPSPFLGPGEDYLPEGKADYQKLSLYERLRA HHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH IYVEGKERIPYEDNPLKRPYLAVCRSSRCYPSRHYQPVVEALQSALREANLDIQVITSGC HHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHH LEVCQQGPVVFYSGDRTWYKRVTPQVARQIVQEHLLKNCPLKAHLFPGD HHHHHCCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCC >Mature Secondary Structure AAFSPWITPLNQTWQEVSPTGWTTVYEGIPAHIDCLGPLLYELFQERWAEIQVGQVVEG CCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCEECCCCCCC GVLEAAFKDPPALCVLYDGYLTVATETWHLHLCLEEHQGGPYSRTPPELRRKRLVGRAAL CHHHHHHCCCCEEEEEECCEEEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH YRRLNPQGQPRQWGIQFWNGAEESLLQIFLPSPFLGPGEDYLPEGKADYQKLSLYERLRA HHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH IYVEGKERIPYEDNPLKRPYLAVCRSSRCYPSRHYQPVVEALQSALREANLDIQVITSGC HHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHH LEVCQQGPVVFYSGDRTWYKRVTPQVARQIVQEHLLKNCPLKAHLFPGD HHHHHCCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA