| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605769
Identifier: 86605769
GI number: 86605769
Start: 1091762
End: 1094227
Strand: Reverse
Name: 86605769
Synonym: CYA_1074
Alternate gene names: NA
Gene position: 1094227-1091762 (Counterclockwise)
Preceding gene: 86605770
Following gene: 86605768
Centisome position: 37.31
GC content: 63.79
Gene sequence:
>2466_bases ATGAGAAACCCCCTCACGTCCCCAGTGCAGCGCTGGAGCCGGCGACCTCAGGCAGCCTCTTCTCGAAAAGCCCAGCCCCC CCTTTCCGAGCGGGTTGTCGGCTACGCCCTAGCGCTTCTCTCCCTCACTGCCGTCCACGGGATCCGCTACTACAACGAGC CGCAACTGACCGTTGGCAGCCGCTCCCCGCAAACGTTTCTCGCCCCTGCAGCGGCAGAGATCGAGGACGTGGAGGCCACC CAGGCCCGGCAAGCCGAGGCGCGACGGCGGGTGGTACAGGCCCTCAAAATCAACAGCGCCGCCAACGAGAGCATGCGGCA AAATCTGGAGGCCCTCCTGGCCGCAGTGGAGGCGATTCGGCAAGAGGCCGGCCCTCTGCCCTACGTTTCCGTTCAGTTGC TCTCCCTGCCTACTCAGATCTATCTGCGCCAACTGCCACCCGAAGAATGGGAGGCCTTACAGGCGGCAGTGCGGGAAACG GCCATCGGCACCCCCTCGACCGCTCCGCCTTTTCCGGCACAAAGGCGTCCGGAGCAGCTTCCCCCCGACCAGCGGGCCAG GCAAGAGCTGGTCCAGGTTTGGCAGCGGGCCTGGTTGGATGGAGCGGCCACTCAGACGGCGGCGACGGATCCCTATACCC AGCTAATTGCCCAGGTGGAGGCGGCACAGCAGCGCTACCAAGGGGCTTTGCCGTCTCTGGAACAGCTCACCCCCCCTGTC CCGGCCACGGTTCTCAACTTGACGGAGGCCGACTGGCAACATTTGCAAAACTTGAGCCGGCGGGTCTTGGAGCGCCTGCA GAAGATAGGCATTGTGGATGGCCTGCCCCGCGAGGTGCGCGCCGAAGGGATCCAAGCCCAACTGGACGATCTGGCCTTTC CGGGCAGTGCCGCCCAGCGGCGGGAGCTGCAGGGGCTGGTTTATCAGTGGCTGCAGCAGGTGCTGATCCCCAATCTGGAG GTGGATCCGCAGCGCACCGAGCAGCGCATTCGCGCCGAGCTGGAAAAAGTTGAGCCCGTCCTGATCTCGGTTGCCGAGAA CCAGGTAATTGTGCGAGTGGATCAGGTCATCACCCCCGAGATCTTTTTGATTTTGGATCACTTTGGTTTTACCCAGCGCC GGATCAACATCTGGGGCCTGGTGGGGGTAGCTGGCGTCATGGGCTTGGGCCTGGCTGTCTTCGTGCCTTTGCAGCAACGC TTGCAGCCGGGATTGCGCCGCCGGGATCGGGTGTTGATCCTGATGGTTTCCCTGACTGCTCCCCTGTTGGCGGCCTTGTT CAAGCTGGAGTTCAGCTCTTTGCCGGCGGTGGGGCTGTTGCTGGGCAGTTTTTACGGGGCTGGGCTGGGCCTGGTGGTAG TGGTGGGCCAGGCGTTGTTTTTGCCCTTGGTCTCTGCTGCCAACCTACTCACCTTTGTGCCCTTACTTTCCGGCAGTGTG GTGGCCTGCGCCCTGGCCGGGCGCTCGCGTTCCCGCGAAGAGCTGGCCCTGCTGGGAGGAGGGGCGGCGGCAGTGCAGAT GCTCACCTATGCGGCTGCTAGCTTGACCACAACGGGCGGCATCGACCTATTGGCGATGGCCTTGGGGGGAGGGATCACGC TGGGGTGGAGCATTGTGGCCCTGGGGGCCAGCCCCTACCTGGAGCGCCTGTTCGACCTGGCCACCCCCATTCGCCTCATC GAGTTGAGCAACCCCAACCGCACCTTGCTGCGGCGGCTGGCGGCAGAGGCCCCTGGCACCTTTCAGCACACCCTGTTTGT GGCCACTTTGGCGGAACGGGCCGCCCAGAAGTTAAACCTCAACGTGGAGCTGGTGCGCACCGGCACCCTCTACCACGACA TCGGCAAGATGTTGCAGGCCCGCTACTTCATCGAGAACCAAATGGGCGGCCTCAACCCCCATACGCAACTGGACGATCCC TACCGCAGCGCCCAGATCATCAAAGCGCACGTCAGCGATGGGCTGCGCCTGGCCAAGCAATACAATCTGCCCACCGCCGT CCAAGCTTTTATCCCTGAGCACCAGGGGACGATCCTGATTGCTTACTTTTACCATCAAGCCCAGATGAAAGCCGGAGATC AACCGGTGCCCGAGGAGCCGTTCCGCTACGATGGCCCCATCCCCCAGAGCAAGGAGACAGGGGTGGTGATGCTGGCCGAT GCCTGTGAGGCGGCCCTGCGCAGCATGACCCTGAGCGACGGCTTCGGCCCTGAGGTGGTTGAGCGGGCTAAGGCCGTTGT CCGCAAAATCGCCCAGGCCCGTTGGCAAGATGGCCAACTGGTCGATAGCGGTCTGACGCTGCGGGATCTGGAGGTGGTGG CAGACGCTTTTGTGGAGGTGTGGCGGGAATCCAACCACGAGCGCATTCCCTACCCCAGTCCTGCCCCTGCCCTGCCCTCG CCTGAGTCCGACGCTGCCCAGGCCCAGATGCCCGTGCTGATGACTCCTTCAACGGGATCTCCCTAG
Upstream 100 bases:
>100_bases GTATGATCGGGCAGATCACGATTGGCGACTAGGCTATCTCCTGGGCTAGGGGAGCAAAAGGGGATAGAAAAGAGAAGAAC GCTGCCAGGCAAATCCTTCT
Downstream 100 bases:
>100_bases CCTCGGCGAGCTGAGTAGGTCGAGAAAAGTCTAGTCCCAGAGCTCATCCATCGGTACGATAAGGGATCATTTGCGCCGGT GGCGCGTGGCGCTGTTGCGA
Product: HDIG domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 821; Mature: 821
Protein sequence:
>821_residues MRNPLTSPVQRWSRRPQAASSRKAQPPLSERVVGYALALLSLTAVHGIRYYNEPQLTVGSRSPQTFLAPAAAEIEDVEAT QARQAEARRRVVQALKINSAANESMRQNLEALLAAVEAIRQEAGPLPYVSVQLLSLPTQIYLRQLPPEEWEALQAAVRET AIGTPSTAPPFPAQRRPEQLPPDQRARQELVQVWQRAWLDGAATQTAATDPYTQLIAQVEAAQQRYQGALPSLEQLTPPV PATVLNLTEADWQHLQNLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLAFPGSAAQRRELQGLVYQWLQQVLIPNLE VDPQRTEQRIRAELEKVEPVLISVAENQVIVRVDQVITPEIFLILDHFGFTQRRINIWGLVGVAGVMGLGLAVFVPLQQR LQPGLRRRDRVLILMVSLTAPLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSAANLLTFVPLLSGSV VACALAGRSRSREELALLGGGAAAVQMLTYAAASLTTTGGIDLLAMALGGGITLGWSIVALGASPYLERLFDLATPIRLI ELSNPNRTLLRRLAAEAPGTFQHTLFVATLAERAAQKLNLNVELVRTGTLYHDIGKMLQARYFIENQMGGLNPHTQLDDP YRSAQIIKAHVSDGLRLAKQYNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGDQPVPEEPFRYDGPIPQSKETGVVMLAD ACEAALRSMTLSDGFGPEVVERAKAVVRKIAQARWQDGQLVDSGLTLRDLEVVADAFVEVWRESNHERIPYPSPAPALPS PESDAAQAQMPVLMTPSTGSP
Sequences:
>Translated_821_residues MRNPLTSPVQRWSRRPQAASSRKAQPPLSERVVGYALALLSLTAVHGIRYYNEPQLTVGSRSPQTFLAPAAAEIEDVEAT QARQAEARRRVVQALKINSAANESMRQNLEALLAAVEAIRQEAGPLPYVSVQLLSLPTQIYLRQLPPEEWEALQAAVRET AIGTPSTAPPFPAQRRPEQLPPDQRARQELVQVWQRAWLDGAATQTAATDPYTQLIAQVEAAQQRYQGALPSLEQLTPPV PATVLNLTEADWQHLQNLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLAFPGSAAQRRELQGLVYQWLQQVLIPNLE VDPQRTEQRIRAELEKVEPVLISVAENQVIVRVDQVITPEIFLILDHFGFTQRRINIWGLVGVAGVMGLGLAVFVPLQQR LQPGLRRRDRVLILMVSLTAPLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSAANLLTFVPLLSGSV VACALAGRSRSREELALLGGGAAAVQMLTYAAASLTTTGGIDLLAMALGGGITLGWSIVALGASPYLERLFDLATPIRLI ELSNPNRTLLRRLAAEAPGTFQHTLFVATLAERAAQKLNLNVELVRTGTLYHDIGKMLQARYFIENQMGGLNPHTQLDDP YRSAQIIKAHVSDGLRLAKQYNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGDQPVPEEPFRYDGPIPQSKETGVVMLAD ACEAALRSMTLSDGFGPEVVERAKAVVRKIAQARWQDGQLVDSGLTLRDLEVVADAFVEVWRESNHERIPYPSPAPALPS PESDAAQAQMPVLMTPSTGSP >Mature_821_residues MRNPLTSPVQRWSRRPQAASSRKAQPPLSERVVGYALALLSLTAVHGIRYYNEPQLTVGSRSPQTFLAPAAAEIEDVEAT QARQAEARRRVVQALKINSAANESMRQNLEALLAAVEAIRQEAGPLPYVSVQLLSLPTQIYLRQLPPEEWEALQAAVRET AIGTPSTAPPFPAQRRPEQLPPDQRARQELVQVWQRAWLDGAATQTAATDPYTQLIAQVEAAQQRYQGALPSLEQLTPPV PATVLNLTEADWQHLQNLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLAFPGSAAQRRELQGLVYQWLQQVLIPNLE VDPQRTEQRIRAELEKVEPVLISVAENQVIVRVDQVITPEIFLILDHFGFTQRRINIWGLVGVAGVMGLGLAVFVPLQQR LQPGLRRRDRVLILMVSLTAPLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSAANLLTFVPLLSGSV VACALAGRSRSREELALLGGGAAAVQMLTYAAASLTTTGGIDLLAMALGGGITLGWSIVALGASPYLERLFDLATPIRLI ELSNPNRTLLRRLAAEAPGTFQHTLFVATLAERAAQKLNLNVELVRTGTLYHDIGKMLQARYFIENQMGGLNPHTQLDDP YRSAQIIKAHVSDGLRLAKQYNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGDQPVPEEPFRYDGPIPQSKETGVVMLAD ACEAALRSMTLSDGFGPEVVERAKAVVRKIAQARWQDGQLVDSGLTLRDLEVVADAFVEVWRESNHERIPYPSPAPALPS PESDAAQAQMPVLMTPSTGSP
Specific function: Unknown
COG id: COG1480
COG function: function code R; Predicted membrane-associated HD superfamily hydrolase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011624 - InterPro: IPR011621 - InterPro: IPR003607 - InterPro: IPR006675 [H]
Pfam domain/function: PF07698 7TM-7TMR_HD; PF07697 7TMR-HDED [H]
EC number: NA
Molecular weight: Translated: 89719; Mature: 89719
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNPLTSPVQRWSRRPQAASSRKAQPPLSERVVGYALALLSLTAVHGIRYYNEPQLTVGS CCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC RSPQTFLAPAAAEIEDVEATQARQAEARRRVVQALKINSAANESMRQNLEALLAAVEAIR CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH QEAGPLPYVSVQLLSLPTQIYLRQLPPEEWEALQAAVRETAIGTPSTAPPFPAQRRPEQL HHCCCCCCHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PPDQRARQELVQVWQRAWLDGAATQTAATDPYTQLIAQVEAAQQRYQGALPSLEQLTPPV CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC PATVLNLTEADWQHLQNLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLAFPGSAAQR CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH RELQGLVYQWLQQVLIPNLEVDPQRTEQRIRAELEKVEPVLISVAENQVIVRVDQVITPE HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHEEECCCCEEEEECCHHCCH IFLILDHFGFTQRRINIWGLVGVAGVMGLGLAVFVPLQQRLQPGLRRRDRVLILMVSLTA HHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEEEHHHHHH PLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSAANLLTFVPLLSGSV HHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH VACALAGRSRSREELALLGGGAAAVQMLTYAAASLTTTGGIDLLAMALGGGITLGWSIVA HHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEECHHHEE LGASPYLERLFDLATPIRLIELSNPNRTLLRRLAAEAPGTFQHTLFVATLAERAAQKLNL ECCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC NVELVRTGTLYHDIGKMLQARYFIENQMGGLNPHTQLDDPYRSAQIIKAHVSDGLRLAKQ CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH YNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGDQPVPEEPFRYDGPIPQSKETGVVMLAD CCCCHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHH ACEAALRSMTLSDGFGPEVVERAKAVVRKIAQARWQDGQLVDSGLTLRDLEVVADAFVEV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHH WRESNHERIPYPSPAPALPSPESDAAQAQMPVLMTPSTGSP HHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEECCCCCCC >Mature Secondary Structure MRNPLTSPVQRWSRRPQAASSRKAQPPLSERVVGYALALLSLTAVHGIRYYNEPQLTVGS CCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC RSPQTFLAPAAAEIEDVEATQARQAEARRRVVQALKINSAANESMRQNLEALLAAVEAIR CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH QEAGPLPYVSVQLLSLPTQIYLRQLPPEEWEALQAAVRETAIGTPSTAPPFPAQRRPEQL HHCCCCCCHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PPDQRARQELVQVWQRAWLDGAATQTAATDPYTQLIAQVEAAQQRYQGALPSLEQLTPPV CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC PATVLNLTEADWQHLQNLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLAFPGSAAQR CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH RELQGLVYQWLQQVLIPNLEVDPQRTEQRIRAELEKVEPVLISVAENQVIVRVDQVITPE HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHEEECCCCEEEEECCHHCCH IFLILDHFGFTQRRINIWGLVGVAGVMGLGLAVFVPLQQRLQPGLRRRDRVLILMVSLTA HHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEEEHHHHHH PLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSAANLLTFVPLLSGSV HHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH VACALAGRSRSREELALLGGGAAAVQMLTYAAASLTTTGGIDLLAMALGGGITLGWSIVA HHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEECHHHEE LGASPYLERLFDLATPIRLIELSNPNRTLLRRLAAEAPGTFQHTLFVATLAERAAQKLNL ECCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC NVELVRTGTLYHDIGKMLQARYFIENQMGGLNPHTQLDDPYRSAQIIKAHVSDGLRLAKQ CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH YNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGDQPVPEEPFRYDGPIPQSKETGVVMLAD CCCCHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHH ACEAALRSMTLSDGFGPEVVERAKAVVRKIAQARWQDGQLVDSGLTLRDLEVVADAFVEV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHH WRESNHERIPYPSPAPALPSPESDAAQAQMPVLMTPSTGSP HHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]