| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605669
Identifier: 86605669
GI number: 86605669
Start: 980254
End: 980715
Strand: Reverse
Name: 86605669
Synonym: CYA_0968
Alternate gene names: NA
Gene position: 980715-980254 (Counterclockwise)
Preceding gene: 86605670
Following gene: 86605667
Centisome position: 33.44
GC content: 60.39
Gene sequence:
>462_bases ATGAACTACTGGCTGATGAAATCGGAGCCCAGCGTCTACAGCATCTGGGATCTGCAGCGGGAGGGCCAAACTCTCTGGGA CGGCGTGCGCAACTACCAAGCCCGCAACTACTTGAAGGCCATGCAGGTTGGGGATCGCGCCTTTTTCTACCACTCCAACG CCAACCCTCCCGGCATAGCCGGCTTAATGGAGATCGTGGAAACCCAGGTGGTGGATCCCAGCCAGTTTGATCCCACCAGC CCCTACTACGATCCCAAGTCAACCCCTGCAGCGCCCCGCTGGCAGACAGTGCGGGTGCAATTTGTTGCCGCCTTTGGGCG CTTGATCCCTTTGGCCCAGTTAAGGGCCACTTTTACCCCTGCGGAGTTAGAAGTGGTGCGGCGAGGCACGCGACTGTCGG TGATGCCTGTTCCCCAGGCTGTGGCAGAACGGCTGCTGGCCTTGGCAGCCGTTCCCCTCTAG
Upstream 100 bases:
>100_bases ATTTCACCCCGAAAAGTCCGGCCCTGTAGGCTTGAAGATATTGCAAAACTTTGTCGAGTTTGTTGCCCGTCGCTTGCCTG CTGCCGGCGCCTAGCGTTTC
Downstream 100 bases:
>100_bases GGTTTCCCCTGGCTGCGATCCCGGCCAAGCCTGCTTGCCCTAGGCCATTTTTGCTTTCAAAAGCCAAAGGCTGAGAGGCC CCAGCGCTGCAAGCTCTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 153; Mature: 153
Protein sequence:
>153_residues MNYWLMKSEPSVYSIWDLQREGQTLWDGVRNYQARNYLKAMQVGDRAFFYHSNANPPGIAGLMEIVETQVVDPSQFDPTS PYYDPKSTPAAPRWQTVRVQFVAAFGRLIPLAQLRATFTPAELEVVRRGTRLSVMPVPQAVAERLLALAAVPL
Sequences:
>Translated_153_residues MNYWLMKSEPSVYSIWDLQREGQTLWDGVRNYQARNYLKAMQVGDRAFFYHSNANPPGIAGLMEIVETQVVDPSQFDPTS PYYDPKSTPAAPRWQTVRVQFVAAFGRLIPLAQLRATFTPAELEVVRRGTRLSVMPVPQAVAERLLALAAVPL >Mature_153_residues MNYWLMKSEPSVYSIWDLQREGQTLWDGVRNYQARNYLKAMQVGDRAFFYHSNANPPGIAGLMEIVETQVVDPSQFDPTS PYYDPKSTPAAPRWQTVRVQFVAAFGRLIPLAQLRATFTPAELEVVRRGTRLSVMPVPQAVAERLLALAAVPL
Specific function: Unknown
COG id: COG2947
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI83267861, Length=165, Percent_Identity=46.0606060606061, Blast_Score=142, Evalue=1e-34, Organism=Homo sapiens, GI40806221, Length=165, Percent_Identity=46.0606060606061, Blast_Score=142, Evalue=1e-34, Organism=Homo sapiens, GI7661804, Length=165, Percent_Identity=46.0606060606061, Blast_Score=142, Evalue=1e-34, Organism=Homo sapiens, GI83267859, Length=103, Percent_Identity=52.4271844660194, Blast_Score=115, Evalue=2e-26, Organism=Homo sapiens, GI40806219, Length=103, Percent_Identity=52.4271844660194, Blast_Score=115, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17283; Mature: 17283
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYWLMKSEPSVYSIWDLQREGQTLWDGVRNYQARNYLKAMQVGDRAFFYHSNANPPGIA CCEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH GLMEIVETQVVDPSQFDPTSPYYDPKSTPAAPRWQTVRVQFVAAFGRLIPLAQLRATFTP HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH AELEVVRRGTRLSVMPVPQAVAERLLALAAVPL HHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC >Mature Secondary Structure MNYWLMKSEPSVYSIWDLQREGQTLWDGVRNYQARNYLKAMQVGDRAFFYHSNANPPGIA CCEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH GLMEIVETQVVDPSQFDPTSPYYDPKSTPAAPRWQTVRVQFVAAFGRLIPLAQLRATFTP HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH AELEVVRRGTRLSVMPVPQAVAERLLALAAVPL HHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA