Click here to switch to the map view.

The map label for this gene is csx10

Identifier: 86605584

GI number: 86605584

Start: 883111

End: 884334

Strand: Reverse

Name: csx10

Synonym: CYA_0880

Alternate gene names: NA

Gene position: 884334-883111 (Counterclockwise)

Preceding gene: 86605585

Following gene: 86605583

Centisome position: 30.15

GC content: 65.44

Gene sequence:

>1224_bases
ATGGAGGCCATTGAACTCACGCTCACTGCCGAGTCTCCCCTGGCCATCGGTCGGCAAAAGCCGGGCGGCTCCATCAGCGA
GGCCCAGGACTTCATTCCCGGCAGCGTGATCCGGGGGGCCTTGGCCGACCTCCTGCTCCGCCAAAGCCGGCACCGCCCCG
GCGAGGCCCTGACAGGAGATCTGGCCGCCCTGTTCACGGAGGCCCGTGCGGCGGTGTTTACCCATGCTTATCCGGGATCC
GGCAGCCGGGTTTTGCCGGCCACGGCCTTTAGCTCCAAAAACAACCCCGGCTTCCGCTCAGAGGCGGGCAAAACGGGGGT
GTTCGACACACTGCTGGATCGCTTCTGCTCGCAGCGGCTGGGGATCCCCTTTGATCCGGCAGAGCCGGATGGCTCCGGGG
GCAGGGTGGAGCCCTTCGGCGGCTTTTACAGCCAGGAGGAGGGATCCCGCTACCGAAGGGTGGCCGTGTCCAAGCGCCTG
CTCACGCGGGTGGGGATCAACCGCCGCCGCGCCACCGCCGCCGACCAGATCCTCTACAGCCTGGAGGTGATCAACGAGGG
CCGGGCCGGGCGAGATGGGAGCTTGCAGCCTTCCCTCTTCAGCGGCCACATCTATCTGCAGGATCGCGAGCTGGCGGCAG
CCCTCGCCGGCTACCTCAACACCCACGCCCGCCGCTTGTCCTTGGGAGGGGGAGTGTCGCGGGGGCTGGGCCGGGTCAGC
CTTGCCGCTCGACACCTGAGGGCCCCGAAGCCCTCCCTGGCTGAGCGGGTGGCAGCCTTTAACCAAAAGCTGCGGCAGCG
CTGGCAACAATGGCAGGTGTTTGGGAATCCCTGGCAGCCCTTGCCGCCGGAGCGGCAGTACTTCTCCATCGGGCTGCAGT
CGGGGGCCATCCTCAAGGAGCGCTGGCAACGCACCACGGTGCTCACGCCGCCGATGCTCCAGGAGGAGGCCAACTGCGAG
GACGGATCCCTGGTCTTGGAGCTGGCCTGTAGCAGCTACGCCTATGTTTCCGGCTGGAACGCCGCCTGGGGGCTTTTTAA
AGATGTAGAGCTGGTTACAACCCAGGGCAGCGTCTTCCTGCTGAGCACCACGCAAATGGAGCGCTGGATCCCGATTTTGG
CGGAGATGGAATACTGGGGCATCGGCGAGCGAACCGCGGAGGGATTTGGCCAAATTGAGGTCTGTAGTCTGTTCCATCAT
CATTTCTGGGAGAACCCGCTATGA

Upstream 100 bases:

>100_bases
AATCTGCAGGCTTGGGTTGGTTGCACTGGGATCCCCAGTCTCTAGCTGCCCTGCAGCCGAATGACGCAGATTGGGCCTTT
TTGGCCGGAGGAGGGAGCTG

Downstream 100 bases:

>100_bases
CCTTCGCCACCAGCGAGAGCAAACTGGAGCAAAAACAGGAACTTGAGATCCAGCGGCACATTCGGCTGGCCGAAGATGAG
CTGGTTGCCAGAATCCAAAC

Product: CRISPR-associated RAMP Csx10 family protein

Products: NA

Alternate protein names: CRISPR-Associated RAMP Protein; Csx10 Family CRISPR-Associated RAMP Protein

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MEAIELTLTAESPLAIGRQKPGGSISEAQDFIPGSVIRGALADLLLRQSRHRPGEALTGDLAALFTEARAAVFTHAYPGS
GSRVLPATAFSSKNNPGFRSEAGKTGVFDTLLDRFCSQRLGIPFDPAEPDGSGGRVEPFGGFYSQEEGSRYRRVAVSKRL
LTRVGINRRRATAADQILYSLEVINEGRAGRDGSLQPSLFSGHIYLQDRELAAALAGYLNTHARRLSLGGGVSRGLGRVS
LAARHLRAPKPSLAERVAAFNQKLRQRWQQWQVFGNPWQPLPPERQYFSIGLQSGAILKERWQRTTVLTPPMLQEEANCE
DGSLVLELACSSYAYVSGWNAAWGLFKDVELVTTQGSVFLLSTTQMERWIPILAEMEYWGIGERTAEGFGQIEVCSLFHH
HFWENPL

Sequences:

>Translated_407_residues
MEAIELTLTAESPLAIGRQKPGGSISEAQDFIPGSVIRGALADLLLRQSRHRPGEALTGDLAALFTEARAAVFTHAYPGS
GSRVLPATAFSSKNNPGFRSEAGKTGVFDTLLDRFCSQRLGIPFDPAEPDGSGGRVEPFGGFYSQEEGSRYRRVAVSKRL
LTRVGINRRRATAADQILYSLEVINEGRAGRDGSLQPSLFSGHIYLQDRELAAALAGYLNTHARRLSLGGGVSRGLGRVS
LAARHLRAPKPSLAERVAAFNQKLRQRWQQWQVFGNPWQPLPPERQYFSIGLQSGAILKERWQRTTVLTPPMLQEEANCE
DGSLVLELACSSYAYVSGWNAAWGLFKDVELVTTQGSVFLLSTTQMERWIPILAEMEYWGIGERTAEGFGQIEVCSLFHH
HFWENPL
>Mature_407_residues
MEAIELTLTAESPLAIGRQKPGGSISEAQDFIPGSVIRGALADLLLRQSRHRPGEALTGDLAALFTEARAAVFTHAYPGS
GSRVLPATAFSSKNNPGFRSEAGKTGVFDTLLDRFCSQRLGIPFDPAEPDGSGGRVEPFGGFYSQEEGSRYRRVAVSKRL
LTRVGINRRRATAADQILYSLEVINEGRAGRDGSLQPSLFSGHIYLQDRELAAALAGYLNTHARRLSLGGGVSRGLGRVS
LAARHLRAPKPSLAERVAAFNQKLRQRWQQWQVFGNPWQPLPPERQYFSIGLQSGAILKERWQRTTVLTPPMLQEEANCE
DGSLVLELACSSYAYVSGWNAAWGLFKDVELVTTQGSVFLLSTTQMERWIPILAEMEYWGIGERTAEGFGQIEVCSLFHH
HFWENPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44858; Mature: 44858

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAIELTLTAESPLAIGRQKPGGSISEAQDFIPGSVIRGALADLLLRQSRHRPGEALTGD
CCEEEEEEECCCCHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
LAALFTEARAAVFTHAYPGSGSRVLPATAFSSKNNPGFRSEAGKTGVFDTLLDRFCSQRL
HHHHHHHHHHHHEEECCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
GIPFDPAEPDGSGGRVEPFGGFYSQEEGSRYRRVAVSKRLLTRVGINRRRATAADQILYS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LEVINEGRAGRDGSLQPSLFSGHIYLQDRELAAALAGYLNTHARRLSLGGGVSRGLGRVS
HHHHHCCCCCCCCCCCCCEEECEEEEECHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHH
LAARHLRAPKPSLAERVAAFNQKLRQRWQQWQVFGNPWQPLPPERQYFSIGLQSGAILKE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHH
RWQRTTVLTPPMLQEEANCEDGSLVLELACSSYAYVSGWNAAWGLFKDVELVTTQGSVFL
HHHHCEECCCCHHHHCCCCCCCCEEEEEHHCCEEEEECCCHHHHHHCCEEEEEECCCEEE
LSTTQMERWIPILAEMEYWGIGERTAEGFGQIEVCSLFHHHFWENPL
EECCCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEAIELTLTAESPLAIGRQKPGGSISEAQDFIPGSVIRGALADLLLRQSRHRPGEALTGD
CCEEEEEEECCCCHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
LAALFTEARAAVFTHAYPGSGSRVLPATAFSSKNNPGFRSEAGKTGVFDTLLDRFCSQRL
HHHHHHHHHHHHEEECCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
GIPFDPAEPDGSGGRVEPFGGFYSQEEGSRYRRVAVSKRLLTRVGINRRRATAADQILYS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LEVINEGRAGRDGSLQPSLFSGHIYLQDRELAAALAGYLNTHARRLSLGGGVSRGLGRVS
HHHHHCCCCCCCCCCCCCEEECEEEEECHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHH
LAARHLRAPKPSLAERVAAFNQKLRQRWQQWQVFGNPWQPLPPERQYFSIGLQSGAILKE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHH
RWQRTTVLTPPMLQEEANCEDGSLVLELACSSYAYVSGWNAAWGLFKDVELVTTQGSVFL
HHHHCEECCCCHHHHCCCCCCCCEEEEEHHCCEEEEECCCHHHHHHCCEEEEEECCCEEE
LSTTQMERWIPILAEMEYWGIGERTAEGFGQIEVCSLFHHHFWENPL
EECCCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA