| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605562
Identifier: 86605562
GI number: 86605562
Start: 865478
End: 866230
Strand: Reverse
Name: 86605562
Synonym: CYA_0858
Alternate gene names: NA
Gene position: 866230-865478 (Counterclockwise)
Preceding gene: 86605567
Following gene: 86605561
Centisome position: 29.54
GC content: 64.28
Gene sequence:
>753_bases ATGACCACAGCCTCTCAAGCTGCCCTTTTCGACGCCCTTGCCCGGCGCCGTGCCCTCAAGATCATCAGCGGCCTGCAAAA CTTCGACCTGCAGTCGGTGCTGAAAGTCACCCGCGCCGCCCAGGAGGGAGGAGCCACTTGGGTGGATATCGCCGCCAGTC CCGAATTGGTGCAGCAGGTGCGAGCCCAGATCGAGCTGCCCATCTGCGTGTCGGCGGTGGACCCGCAGCAATTGGCTGCT GCCGTGCAGGCGGGGGCCGACATGGCCGAGATCGGCAATTACGACAGCTTCTACCCTTCGGGCCGCATCTTCTCCGCTGC GGAAGTTCTAGATCTCACTCGCCAAACCCGCTCCCTGCTGCCGCGCACTCTCCTGTCGGTTACCGTTCCCCATACGCTGC CTTTGGATCAGCAGGCGGAATTGGCAGAGAAACTGGAGGATCTGGGGGCCGATCTCATCCAAACCGAGGGCGGCACCAGC GCTGAGCCCCGTCACGGCGGATCCCTGGGCCTAATCGAGAAGGCTGCCCCCACCCTGGCTGCCGCCTATGAGATTAGCCG GGTGGTCTCGCTGCCGGTCATCTGCGCCTCTGGCCTCTCAGCGGTGACGGTGCCCTTGGCCATCGCTGCCGGTGCTTCAG GAGTGGGGGTGGGCAGAGCTGTCAGTCGCCTCCAGGATGAAGTGGCCATGGTGGCCCAGGTGCGGGCGCTGAGGGAAGCT TTGTCTGAATCACGGGTGTCGGCGCTTGTTTGA
Upstream 100 bases:
>100_bases CCTTGTAGGATGGCAGCAAACCCTCTAGACTGAGCAAAGGTTTCCACAGCCGATTTGCTTGCACTCCTCCTGTGTCCCGT TTCCACAAGCTGACAAGCCT
Downstream 100 bases:
>100_bases CATTGGATGGGAGAGTCCTTTTCCCGGTGGGGTGGCAGGGCGCGGTGTGGCTCTGGCCGAAGCGCAGTTGGAGGTGGGTA CCTCCACCACCTTGCCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MTTASQAALFDALARRRALKIISGLQNFDLQSVLKVTRAAQEGGATWVDIAASPELVQQVRAQIELPICVSAVDPQQLAA AVQAGADMAEIGNYDSFYPSGRIFSAAEVLDLTRQTRSLLPRTLLSVTVPHTLPLDQQAELAEKLEDLGADLIQTEGGTS AEPRHGGSLGLIEKAAPTLAAAYEISRVVSLPVICASGLSAVTVPLAIAAGASGVGVGRAVSRLQDEVAMVAQVRALREA LSESRVSALV
Sequences:
>Translated_250_residues MTTASQAALFDALARRRALKIISGLQNFDLQSVLKVTRAAQEGGATWVDIAASPELVQQVRAQIELPICVSAVDPQQLAA AVQAGADMAEIGNYDSFYPSGRIFSAAEVLDLTRQTRSLLPRTLLSVTVPHTLPLDQQAELAEKLEDLGADLIQTEGGTS AEPRHGGSLGLIEKAAPTLAAAYEISRVVSLPVICASGLSAVTVPLAIAAGASGVGVGRAVSRLQDEVAMVAQVRALREA LSESRVSALV >Mature_249_residues TTASQAALFDALARRRALKIISGLQNFDLQSVLKVTRAAQEGGATWVDIAASPELVQQVRAQIELPICVSAVDPQQLAAA VQAGADMAEIGNYDSFYPSGRIFSAAEVLDLTRQTRSLLPRTLLSVTVPHTLPLDQQAELAEKLEDLGADLIQTEGGTSA EPRHGGSLGLIEKAAPTLAAAYEISRVVSLPVICASGLSAVTVPLAIAAGASGVGVGRAVSRLQDEVAMVAQVRALREAL SESRVSALV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26061; Mature: 25930
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTASQAALFDALARRRALKIISGLQNFDLQSVLKVTRAAQEGGATWVDIAASPELVQQV CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH RAQIELPICVSAVDPQQLAAAVQAGADMAEIGNYDSFYPSGRIFSAAEVLDLTRQTRSLL HHHCCCCEEEECCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH PRTLLSVTVPHTLPLDQQAELAEKLEDLGADLIQTEGGTSAEPRHGGSLGLIEKAAPTLA HHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH AAYEISRVVSLPVICASGLSAVTVPLAIAAGASGVGVGRAVSRLQDEVAMVAQVRALREA HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LSESRVSALV HHHHHHHHCC >Mature Secondary Structure TTASQAALFDALARRRALKIISGLQNFDLQSVLKVTRAAQEGGATWVDIAASPELVQQV CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH RAQIELPICVSAVDPQQLAAAVQAGADMAEIGNYDSFYPSGRIFSAAEVLDLTRQTRSLL HHHCCCCEEEECCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH PRTLLSVTVPHTLPLDQQAELAEKLEDLGADLIQTEGGTSAEPRHGGSLGLIEKAAPTLA HHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH AAYEISRVVSLPVICASGLSAVTVPLAIAAGASGVGVGRAVSRLQDEVAMVAQVRALREA HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LSESRVSALV HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA