| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is phoR [H]
Identifier: 86605545
GI number: 86605545
Start: 851354
End: 851761
Strand: Reverse
Name: phoR [H]
Synonym: CYA_0840
Alternate gene names: 86605545
Gene position: 851761-851354 (Counterclockwise)
Preceding gene: 86605550
Following gene: 86605543
Centisome position: 29.04
GC content: 56.86
Gene sequence:
>408_bases TTGGCCCCCGACCCGCTAACGGGGTTACCAGAAAGCGCCTTATATCCCCTGCCCAAAGATAGGGACTTTACGGCGCTTTC CGGGAAATTTACTCCTGCCCAGCACCGGATTAACCTACAGGTCACCAGCGCTCCTCCTCACCTGGAAATCCAAATTGGCA ACACCGGCATCATCATCCCCCCTGCAGAACAAAAGCGGGTATTTGAGAAGTTTTACCGCGTGCCCAGCTCGGATCCCCGG CGGCGGGGAGGGACAGGGTTGGGCTTGGCCCTTGTGCAACAACGGGTAAACTTGTTGCAAGGGAAAATCTACCTTAACAG CGAGGCCGACCACACTTGTTTTACCTTGCGGTTGCCCCGGCTTCTTTCTGTCTCCGGCCAACAGCAGTCAGCTCAGCCTA GGGCCTAG
Upstream 100 bases:
>100_bases CCAGAAAAGATCCTAGAAGACTCCAATTCTAGGATCTCATCCTGGAGAGACGGGAGCGGGAAGATTGCCAAAAAGTTGCT CAGTACCCCAAGTGTAGAGT
Downstream 100 bases:
>100_bases GCGTCGGGGTGGCTGGCTGGGGAGAAGCAGAGGATTCCCTTTCTTCGATCACTTTTTGCAAGCGGGCCCGCACTCGCTGG TTCAAAACGGGATCTTCGTT
Product: sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MAPDPLTGLPESALYPLPKDRDFTALSGKFTPAQHRINLQVTSAPPHLEIQIGNTGIIIPPAEQKRVFEKFYRVPSSDPR RRGGTGLGLALVQQRVNLLQGKIYLNSEADHTCFTLRLPRLLSVSGQQQSAQPRA
Sequences:
>Translated_135_residues MAPDPLTGLPESALYPLPKDRDFTALSGKFTPAQHRINLQVTSAPPHLEIQIGNTGIIIPPAEQKRVFEKFYRVPSSDPR RRGGTGLGLALVQQRVNLLQGKIYLNSEADHTCFTLRLPRLLSVSGQQQSAQPRA >Mature_134_residues APDPLTGLPESALYPLPKDRDFTALSGKFTPAQHRINLQVTSAPPHLEIQIGNTGIIIPPAEQKRVFEKFYRVPSSDPRR RGGTGLGLALVQQRVNLLQGKIYLNSEADHTCFTLRLPRLLSVSGQQQSAQPRA
Specific function: Member of the two-component regulatory system phoP/phoR involved in the alkaline phosphatase genes regulation. PhoR may function as a membrane-associated protein kinase that phosphorylates phoP in response to environmental signals [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 14879; Mature: 14748
Theoretical pI: Translated: 10.52; Mature: 10.52
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPDPLTGLPESALYPLPKDRDFTALSGKFTPAQHRINLQVTSAPPHLEIQIGNTGIIIP CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEC PAEQKRVFEKFYRVPSSDPRRRGGTGLGLALVQQRVNLLQGKIYLNSEADHTCFTLRLPR CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEECCCCCCEEEEEECCH LLSVSGQQQSAQPRA HCCCCCCCCCCCCCC >Mature Secondary Structure APDPLTGLPESALYPLPKDRDFTALSGKFTPAQHRINLQVTSAPPHLEIQIGNTGIIIP CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEC PAEQKRVFEKFYRVPSSDPRRRGGTGLGLALVQQRVNLLQGKIYLNSEADHTCFTLRLPR CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEECCCCCCEEEEEECCH LLSVSGQQQSAQPRA HCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 3142862; 9387221; 9384377 [H]