| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605503
Identifier: 86605503
GI number: 86605503
Start: 806399
End: 808078
Strand: Reverse
Name: 86605503
Synonym: CYA_0797
Alternate gene names: NA
Gene position: 808078-806399 (Counterclockwise)
Preceding gene: 86605504
Following gene: 86605492
Centisome position: 27.55
GC content: 63.51
Gene sequence:
>1680_bases ATGCTCAAGAGGACGGCTCGTTGCAGGTGGGGTATGCAGGCCCAACTTTATCGTCGCTCTCGTCCGCTCTCCCTGACGTT GATGGCGGTGGGGAGCTCTTGGCTTTTGGGATCCTGTCAGCTCAGGGCACCCCAGGTGCAGTTGCCTGGCGATGTTCTGC CCGAGACGGCGCTGGTTCCCCAATCGGCACCTCTGGTGCTGGCCCTTTCTACCAAACCGGAAGAGTCGCTCCGCACCCAC CCTGACCTTTTGGCCCGTTGGGAAAGCTGGACGGCAGAAGCTTGGGCCAGCACTGGCCAGGAGTTTTCTCGGGAAGAGAT GCAAGCTTGGGCCGGGGATCACTTTACGCTGGCGGTGGTGATCCCCAATTTGGTGCCAGGGGCGGCGGAGCCGGTGCCTG GGATCCTGTGGGGAGCCAGCACCCGCAACGCCGATCTGTCCAGGCAATTTCTGGCCCAAGTGCGGCAACAGGCAGAGGCA GAAGGGGCCAACTTTGAGCAGCGCCAGGAGCAAGGAGTGACTCTCTACGTGCAAACCAACGGCAAGCCGGGCGAACGGTG GGTGACGGCGGAGTTTGGCAACCGCTTCGTGGCCCTGGCCAACGATCCCAAGGTGATGCAGCGGGCGATTGCTGTCTATC GCGGCGAGGCGGAGCCCATCAGCCGCGCCGAAGGTTTCCGCACCGCCGTGGGCGATCTCTACCAGAAGCCGGGCACCCTG GCTTTTGCCTACTTCAATTTCCAGGCCCTCCACGACGACCCCACATCCTTTAAAGATTGGATGCCGGATCTAGATCCGGA AGAGCTGGGATCCCTGCAGCCGCTGCGCTCTCTGGCCATGGCCGCCCACTGGCGGGAGCAGGGCCTGCAGATGCGCATGC TCACCCAACTGGATCCCCAAACCCCGCTGCTGGGCAAGTGGCAAACCGCCCGGGGCGAGCTGATCCGGCGGCTGCCCGGC AGTGCCCTGGCGGTGATCACCACCCAGCAGGTGGCCCAGCGCTGGCAAGCGGTTGTCTCTGAACTGGAAAAGGATCCCCA GGCCAAAGAGTTGCTGGATGAGCTGCGGGCCGAGTTCCGGGCCAATACCCGCCTGGATTTGGATCAAGACCTGATGGCTT GGCTGGACGGGGAGATGGCCCTGCTGGTGGCGCCCGATGCCCAGGCCCACCCCTTCTTGCAGGGCATGGGGGCGGCTTTG CTCGTCGAGACCAGCCAAAAAGACAAGGCCAACGCGGCCCTGACTCAGTTGGATCGGCTGGCCCAAGAATCGGGAGTAGG GGTAACGGAGGCGGGTGGACAGGTGACGTGGGCGGATCCCTTGTTTAACCGCCCGCTTTTGACCCGCGCCTGGGAAGGCA ACTATTTGATCGTGACCAGCAGCACGGCGGCGCTGCAAACCCTCGCCCAACGCCAGGGCAATTGGATCCCTCAAACCGAG CCGCTGAAGACCCTCTACGAGCAGTTGCCCAAGCCCAACTACGGCTACTTTTTGCTCAACTGGCGCGGCATCCGCACAGT GCTAGAAGCCGCTTTGCCGGGTGGGCTGGCAAGCTTGGAGCCGGAGGCCCGCGAGCTACTGACCCGTATCGATGGGTTGG GGATCACCAGCTACCCCGTCGGAGATCATGCCCTTGGACTGGAGCTGCTGGTCACGGTGCCGCCCAAGCCACAGCCGTAA
Upstream 100 bases:
>100_bases TGTGGATGAGCTGGTCGCCCGCGCCCGACCCAAGTAGCTGATTTATTTCGATACTTCGGTGAAGGCCTGGGATCACAGAC AGGGGCTAAGTCCATCGCCT
Downstream 100 bases:
>100_bases GAGAGGGGCCGGCGGTGAGGGCTACAACCGGATCAGACCGTAGGTGAGGGCGTAGCGCACCAGCTCGGTGCGGCTGCTGG TGCCCGTCTTGTTGAGGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 559; Mature: 559
Protein sequence:
>559_residues MLKRTARCRWGMQAQLYRRSRPLSLTLMAVGSSWLLGSCQLRAPQVQLPGDVLPETALVPQSAPLVLALSTKPEESLRTH PDLLARWESWTAEAWASTGQEFSREEMQAWAGDHFTLAVVIPNLVPGAAEPVPGILWGASTRNADLSRQFLAQVRQQAEA EGANFEQRQEQGVTLYVQTNGKPGERWVTAEFGNRFVALANDPKVMQRAIAVYRGEAEPISRAEGFRTAVGDLYQKPGTL AFAYFNFQALHDDPTSFKDWMPDLDPEELGSLQPLRSLAMAAHWREQGLQMRMLTQLDPQTPLLGKWQTARGELIRRLPG SALAVITTQQVAQRWQAVVSELEKDPQAKELLDELRAEFRANTRLDLDQDLMAWLDGEMALLVAPDAQAHPFLQGMGAAL LVETSQKDKANAALTQLDRLAQESGVGVTEAGGQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNWIPQTE PLKTLYEQLPKPNYGYFLLNWRGIRTVLEAALPGGLASLEPEARELLTRIDGLGITSYPVGDHALGLELLVTVPPKPQP
Sequences:
>Translated_559_residues MLKRTARCRWGMQAQLYRRSRPLSLTLMAVGSSWLLGSCQLRAPQVQLPGDVLPETALVPQSAPLVLALSTKPEESLRTH PDLLARWESWTAEAWASTGQEFSREEMQAWAGDHFTLAVVIPNLVPGAAEPVPGILWGASTRNADLSRQFLAQVRQQAEA EGANFEQRQEQGVTLYVQTNGKPGERWVTAEFGNRFVALANDPKVMQRAIAVYRGEAEPISRAEGFRTAVGDLYQKPGTL AFAYFNFQALHDDPTSFKDWMPDLDPEELGSLQPLRSLAMAAHWREQGLQMRMLTQLDPQTPLLGKWQTARGELIRRLPG SALAVITTQQVAQRWQAVVSELEKDPQAKELLDELRAEFRANTRLDLDQDLMAWLDGEMALLVAPDAQAHPFLQGMGAAL LVETSQKDKANAALTQLDRLAQESGVGVTEAGGQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNWIPQTE PLKTLYEQLPKPNYGYFLLNWRGIRTVLEAALPGGLASLEPEARELLTRIDGLGITSYPVGDHALGLELLVTVPPKPQP >Mature_559_residues MLKRTARCRWGMQAQLYRRSRPLSLTLMAVGSSWLLGSCQLRAPQVQLPGDVLPETALVPQSAPLVLALSTKPEESLRTH PDLLARWESWTAEAWASTGQEFSREEMQAWAGDHFTLAVVIPNLVPGAAEPVPGILWGASTRNADLSRQFLAQVRQQAEA EGANFEQRQEQGVTLYVQTNGKPGERWVTAEFGNRFVALANDPKVMQRAIAVYRGEAEPISRAEGFRTAVGDLYQKPGTL AFAYFNFQALHDDPTSFKDWMPDLDPEELGSLQPLRSLAMAAHWREQGLQMRMLTQLDPQTPLLGKWQTARGELIRRLPG SALAVITTQQVAQRWQAVVSELEKDPQAKELLDELRAEFRANTRLDLDQDLMAWLDGEMALLVAPDAQAHPFLQGMGAAL LVETSQKDKANAALTQLDRLAQESGVGVTEAGGQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNWIPQTE PLKTLYEQLPKPNYGYFLLNWRGIRTVLEAALPGGLASLEPEARELLTRIDGLGITSYPVGDHALGLELLVTVPPKPQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61882; Mature: 61882
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKRTARCRWGMQAQLYRRSRPLSLTLMAVGSSWLLGSCQLRAPQVQLPGDVLPETALVP CCCCCCHHCCCCHHHHHHCCCCCEEEEEEECCCEEEECEEECCCCEECCCCCCCCCCCCC QSAPLVLALSTKPEESLRTHPDLLARWESWTAEAWASTGQEFSREEMQAWAGDHFTLAVV CCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEE IPNLVPGAAEPVPGILWGASTRNADLSRQFLAQVRQQAEAEGANFEQRQEQGVTLYVQTN ECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEEEEC GKPGERWVTAEFGNRFVALANDPKVMQRAIAVYRGEAEPISRAEGFRTAVGDLYQKPGTL CCCCCEEEEEECCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCE AFAYFNFQALHDDPTSFKDWMPDLDPEELGSLQPLRSLAMAAHWREQGLQMRMLTQLDPQ EEEEEEEEEECCCCCCHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCEEHHHHCCCC TPLLGKWQTARGELIRRLPGSALAVITTQQVAQRWQAVVSELEKDPQAKELLDELRAEFR CCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC ANTRLDLDQDLMAWLDGEMALLVAPDAQAHPFLQGMGAALLVETSQKDKANAALTQLDRL CCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHH AQESGVGVTEAGGQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNWIPQTE HHHHCCCEECCCCEEEECCHHHCCCCEEEECCCCEEEEECCHHHHHHHHHHCCCCCCCCC PLKTLYEQLPKPNYGYFLLNWRGIRTVLEAALPGGLASLEPEARELLTRIDGLGITSYPV HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCC GDHALGLELLVTVPPKPQP CCCCCCEEEEEECCCCCCC >Mature Secondary Structure MLKRTARCRWGMQAQLYRRSRPLSLTLMAVGSSWLLGSCQLRAPQVQLPGDVLPETALVP CCCCCCHHCCCCHHHHHHCCCCCEEEEEEECCCEEEECEEECCCCEECCCCCCCCCCCCC QSAPLVLALSTKPEESLRTHPDLLARWESWTAEAWASTGQEFSREEMQAWAGDHFTLAVV CCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEE IPNLVPGAAEPVPGILWGASTRNADLSRQFLAQVRQQAEAEGANFEQRQEQGVTLYVQTN ECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEEEEC GKPGERWVTAEFGNRFVALANDPKVMQRAIAVYRGEAEPISRAEGFRTAVGDLYQKPGTL CCCCCEEEEEECCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCE AFAYFNFQALHDDPTSFKDWMPDLDPEELGSLQPLRSLAMAAHWREQGLQMRMLTQLDPQ EEEEEEEEEECCCCCCHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCEEHHHHCCCC TPLLGKWQTARGELIRRLPGSALAVITTQQVAQRWQAVVSELEKDPQAKELLDELRAEFR CCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC ANTRLDLDQDLMAWLDGEMALLVAPDAQAHPFLQGMGAALLVETSQKDKANAALTQLDRL CCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHH AQESGVGVTEAGGQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNWIPQTE HHHHCCCEECCCCEEEECCHHHCCCCEEEECCCCEEEEECCHHHHHHHHHHCCCCCCCCC PLKTLYEQLPKPNYGYFLLNWRGIRTVLEAALPGGLASLEPEARELLTRIDGLGITSYPV HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCC GDHALGLELLVTVPPKPQP CCCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA