| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605470
Identifier: 86605470
GI number: 86605470
Start: 770446
End: 771204
Strand: Reverse
Name: 86605470
Synonym: CYA_0763
Alternate gene names: NA
Gene position: 771204-770446 (Counterclockwise)
Preceding gene: 86605471
Following gene: 86605468
Centisome position: 26.3
GC content: 61.79
Gene sequence:
>759_bases ATGGGCGTGCGCAAGATCATCTACGGCATTTTCGGGCAGCGGGCCGGCAGCGTTATTGTCGGCACTTGGAACTGGCTGTG GGGGATCCCAGTGGACAAGGGCGGCACAGGGGCGGTGATGGTGGCAGAAGAATCGCTGCGGGCCATGCAAGAAACGGTGC AACGCCTCACCGAAGCCGTCGCCACCCAGGTGGCCGCCTACCAGCGCGCCGAACAGAAATACATGCAAAAGGTGCGCGAG TACCAGGCCCTGGAGAACAAAGCCCGCCTGGCCGCCCAACGGGGGGATCAAGAAGCTGCCCGCCTGGCCATGGCAGAAGC GCTGCGCATTGAAGCGATTCTCGGCCCGCTTAAGGAGAATGTGGAAACAGCAGAGCGCTACGTCACCGCTGCCAAGCAAA AGCTGGCCCGCGAAAAAGAGCGTCTGGCCCTCTACAAGCGCGAGCTGAGCAACCTCAAAGACATCTACGAGGTGAACAAA GCTCTTGAACAGATGACCCGCGTTAACAACGCCTATAGCATTGACTCGGCCAAGTCCCAATTCGAGGCGGCCAAGAACGC CATCCAAGCTCGCCAGCTCAAGGCGCGCGCCCTGAGCGAGCTCTCCGAGGATCGCAGCGAGCAACTTGCCGCCCAACTGG ACGAAATGGCCCTCGACGACGAGGTCTCCCGCCGCCTGGCCATGCTCACCGGCCAAGGAGGCGGCTCGGCCAATCTGCCC TTGCCGGATCTGGATTTCGAGAAGCGGCTTCCCCAATAG
Upstream 100 bases:
>100_bases GAGCAAGGGTTTGACTTTGTCCGCCTGCCCCTTTCTGGCAAGCTTCCCAGTTGCAGAGGAAATTGAATACAGTGAAAGGC AGCAATAGGGAGGGCAAGCC
Downstream 100 bases:
>100_bases TGGGGATCCCTTCTGGCTATTGCTCCGCCTTGTCGGGGCTTTTCCTTACGCTGAGGTGTCGTTCCCAGGAGATAGGGTAA ACCTAGTCCTCGGCGAAATC
Product: pspA/IM30 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MGVRKIIYGIFGQRAGSVIVGTWNWLWGIPVDKGGTGAVMVAEESLRAMQETVQRLTEAVATQVAAYQRAEQKYMQKVRE YQALENKARLAAQRGDQEAARLAMAEALRIEAILGPLKENVETAERYVTAAKQKLAREKERLALYKRELSNLKDIYEVNK ALEQMTRVNNAYSIDSAKSQFEAAKNAIQARQLKARALSELSEDRSEQLAAQLDEMALDDEVSRRLAMLTGQGGGSANLP LPDLDFEKRLPQ
Sequences:
>Translated_252_residues MGVRKIIYGIFGQRAGSVIVGTWNWLWGIPVDKGGTGAVMVAEESLRAMQETVQRLTEAVATQVAAYQRAEQKYMQKVRE YQALENKARLAAQRGDQEAARLAMAEALRIEAILGPLKENVETAERYVTAAKQKLAREKERLALYKRELSNLKDIYEVNK ALEQMTRVNNAYSIDSAKSQFEAAKNAIQARQLKARALSELSEDRSEQLAAQLDEMALDDEVSRRLAMLTGQGGGSANLP LPDLDFEKRLPQ >Mature_251_residues GVRKIIYGIFGQRAGSVIVGTWNWLWGIPVDKGGTGAVMVAEESLRAMQETVQRLTEAVATQVAAYQRAEQKYMQKVREY QALENKARLAAQRGDQEAARLAMAEALRIEAILGPLKENVETAERYVTAAKQKLAREKERLALYKRELSNLKDIYEVNKA LEQMTRVNNAYSIDSAKSQFEAAKNAIQARQLKARALSELSEDRSEQLAAQLDEMALDDEVSRRLAMLTGQGGGSANLPL PDLDFEKRLPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28128; Mature: 27997
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVRKIIYGIFGQRAGSVIVGTWNWLWGIPVDKGGTGAVMVAEESLRAMQETVQRLTEAV CCHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH ATQVAAYQRAEQKYMQKVREYQALENKARLAAQRGDQEAARLAMAEALRIEAILGPLKEN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH VETAERYVTAAKQKLAREKERLALYKRELSNLKDIYEVNKALEQMTRVNNAYSIDSAKSQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH FEAAKNAIQARQLKARALSELSEDRSEQLAAQLDEMALDDEVSRRLAMLTGQGGGSANLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC LPDLDFEKRLPQ CCCCCHHHCCCC >Mature Secondary Structure GVRKIIYGIFGQRAGSVIVGTWNWLWGIPVDKGGTGAVMVAEESLRAMQETVQRLTEAV CHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH ATQVAAYQRAEQKYMQKVREYQALENKARLAAQRGDQEAARLAMAEALRIEAILGPLKEN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH VETAERYVTAAKQKLAREKERLALYKRELSNLKDIYEVNKALEQMTRVNNAYSIDSAKSQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH FEAAKNAIQARQLKARALSELSEDRSEQLAAQLDEMALDDEVSRRLAMLTGQGGGSANLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC LPDLDFEKRLPQ CCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA