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The map label for this gene is nodB [H]

Identifier: 86605471

GI number: 86605471

Start: 771239

End: 771949

Strand: Reverse

Name: nodB [H]

Synonym: CYA_0764

Alternate gene names: 86605471

Gene position: 771949-771239 (Counterclockwise)

Preceding gene: 86605472

Following gene: 86605470

Centisome position: 26.32

GC content: 62.87

Gene sequence:

>711_bases
ATGCCCTTTTGGCCGCCGCAGATCCTCCCCTCTGCCCTCTACCCCCTTCTGCAGCAGGGCCTCAAGACCCTTTTTCCTGA
GGCTCTCTGGGACTTACCGCCAGATCCTCAGAAGCGACAGGTGGCCCTTACCTTTGACGATGGCCCTCACCCTGAATACA
CGCCGACCCTGTTGCAAGTTTTACAGGAGTTTCAGGTACCAGCCACCTTCTTTGTGTTGGGGGAACGGGTGCAGCGCTGG
CCCCACCTGGCCCGGAAAATCCGCCAACAGAGCCACGGCATTGGCCTGCACGGCTGGCAGCACCGCTCGTTTACCCAGCT
TAGCCGCGGTGAACTGCTACAGAGCTTGCGACGCAGCCAGGATACCCTCGTGGCTGCCTGTGGCGGCACCCCAGAAGAGT
ATCGGGCTGTGCGCCCCCCCAACGGTCTCTTCTGGCCCCGGACGCTAACCGACTTGCGCTCCTGGGGGTATCTACCGGTG
ATGTGGAGTGTGGTGCCGGAGGATTGGCTCTGCCCGCCGGTGGCCGTGGTGGTGGAGCGGGTGCTCAACCAAGTGCGGCC
CGGCTCCCTGATCGTGCTCCACGACGGCGTCCAGGGGGGATCTCAGGTAGCCGAGGTAGTCCGCCGTTTGATCCCGGCCT
TGGGGGAGCAAGGGTTTGACTTTGTCCGCCTGCCCCTTTCTGGCAAGCTTCCCAGTTGCAGAGGAAATTGA

Upstream 100 bases:

>100_bases
CCTCCAGGGCCAGATGAGTGGCTCTCAACTGTGGCGGGAGCTAAAGCTGTACAGCCAGTTGGGGGTAACAAGGGGCTCTC
TGGAAAGTTGAGGTCGATCT

Downstream 100 bases:

>100_bases
ATACAGTGAAAGGCAGCAATAGGGAGGGCAAGCCATGGGCGTGCGCAAGATCATCTACGGCATTTTCGGGCAGCGGGCCG
GCAGCGTTATTGTCGGCACT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MPFWPPQILPSALYPLLQQGLKTLFPEALWDLPPDPQKRQVALTFDDGPHPEYTPTLLQVLQEFQVPATFFVLGERVQRW
PHLARKIRQQSHGIGLHGWQHRSFTQLSRGELLQSLRRSQDTLVAACGGTPEEYRAVRPPNGLFWPRTLTDLRSWGYLPV
MWSVVPEDWLCPPVAVVVERVLNQVRPGSLIVLHDGVQGGSQVAEVVRRLIPALGEQGFDFVRLPLSGKLPSCRGN

Sequences:

>Translated_236_residues
MPFWPPQILPSALYPLLQQGLKTLFPEALWDLPPDPQKRQVALTFDDGPHPEYTPTLLQVLQEFQVPATFFVLGERVQRW
PHLARKIRQQSHGIGLHGWQHRSFTQLSRGELLQSLRRSQDTLVAACGGTPEEYRAVRPPNGLFWPRTLTDLRSWGYLPV
MWSVVPEDWLCPPVAVVVERVLNQVRPGSLIVLHDGVQGGSQVAEVVRRLIPALGEQGFDFVRLPLSGKLPSCRGN
>Mature_235_residues
PFWPPQILPSALYPLLQQGLKTLFPEALWDLPPDPQKRQVALTFDDGPHPEYTPTLLQVLQEFQVPATFFVLGERVQRWP
HLARKIRQQSHGIGLHGWQHRSFTQLSRGELLQSLRRSQDTLVAACGGTPEEYRAVRPPNGLFWPRTLTDLRSWGYLPVM
WSVVPEDWLCPPVAVVVERVLNQVRPGSLIVLHDGVQGGSQVAEVVRRLIPALGEQGFDFVRLPLSGKLPSCRGN

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=180, Percent_Identity=28.8888888888889, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323339, Length=179, Percent_Identity=27.3743016759777, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 26668; Mature: 26537

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFWPPQILPSALYPLLQQGLKTLFPEALWDLPPDPQKRQVALTFDDGPHPEYTPTLLQV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHH
LQEFQVPATFFVLGERVQRWPHLARKIRQQSHGIGLHGWQHRSFTQLSRGELLQSLRRSQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
DTLVAACGGTPEEYRAVRPPNGLFWPRTLTDLRSWGYLPVMWSVVPEDWLCPPVAVVVER
HHEEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHH
VLNQVRPGSLIVLHDGVQGGSQVAEVVRRLIPALGEQGFDFVRLPLSGKLPSCRGN
HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure 
PFWPPQILPSALYPLLQQGLKTLFPEALWDLPPDPQKRQVALTFDDGPHPEYTPTLLQV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHH
LQEFQVPATFFVLGERVQRWPHLARKIRQQSHGIGLHGWQHRSFTQLSRGELLQSLRRSQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
DTLVAACGGTPEEYRAVRPPNGLFWPRTLTDLRSWGYLPVMWSVVPEDWLCPPVAVVVER
HHEEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHH
VLNQVRPGSLIVLHDGVQGGSQVAEVVRRLIPALGEQGFDFVRLPLSGKLPSCRGN
HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]