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The map label for this gene is cas1-1

Identifier: 86605441

GI number: 86605441

Start: 734001

End: 734948

Strand: Reverse

Name: cas1-1

Synonym: CYA_0729

Alternate gene names: 86605441

Gene position: 734948-734001 (Counterclockwise)

Preceding gene: 86605442

Following gene: 86605440

Centisome position: 25.06

GC content: 50.21

Gene sequence:

>948_bases
ATGATCGCAAAGACAACTACGAAAAGTTTACGATCTATCCCGAAGGTTCGAGATAGCATAAGCTTTGTCTATGTAGAACG
GTGCCGAATTGAGCAAGATGCGAAAGCTATTGCCGTTTTGCAAGAAGATGGCAGATATATAATCCCTTGTGCCAGCTTGA
CCACTTTAATGCTAGGCCCTGGGACAGCAATTACTCACGCTGCCATCAAGAACTTGGCCGATGGGCTCTGCTCGGTCCAG
TGGGTTGGCGAAGATGGGCTACGCTTCTATGCCAGTGGATCCCATCCTTCCAGCAGCGTGGAAAGGCTTTATCACCAGGC
CAAACTATGGGCAGATCCCGTCCAGCACATGGAAGTGGTTCGGCGTATGTATTCATTTCGCTTTCCCGAACCTCTCAAAG
AAGGGCTAACCCTTGAGCAGATTCGCGGACTGGAGGGGGTGCGAGTGCGAACTGTTTACAGCCGCCTTAGTAAAGAAACA
GGGGTAAATTGGAAGGGACGCTCCTACAAGCTCAAGGAATGGGAGTGTGCTGATCCCGTTAATCGTGCTCTTTCTGTTGC
CAATACTTGCCTCTACGCTGTTTGCCAGGCAGCGCTCAATGCCGTAGGCTATTCAACTGCGTTGGGGTTTATTCACATCG
GCAAGCCCTTATCTTTTGTTTATGACGTTGCCGATCTCTACAAGACAGAGATCACCATCCCTGTTGCCTTCAAGGCTGCC
GCTGAGTTGATGCCAAACTTTGAGTCGAGAACTAGGCAACTGTGTCGAGAAAAGTTTGTAGAGCATCGGTTGATGCAGAG
AATCATAGACGATGTTGATGCCATCCTCGGCTTCAGAGCCACACAGGAGGAGTCAAGCCCTGTAGGATCTCTTTGGGATA
ACGAGAAGGGAGCTGTTGAGGGGGGAGTGAGCTACGGAGAAGAGTTGGATGAGGAAATGTCGGTCTGA

Upstream 100 bases:

>100_bases
AAGGAATTGGGCGAGGACGCTCCTACGGATGTGGACTTCTATCGCTCAGCAAGATCAGTTACTTTCCACGCTAGTTTTGC
CTTTTAAGGGGGAGTGTCTT

Downstream 100 bases:

>100_bases
TGGTGGTCTTTATCTTAGAGAATGTCCCCGCAAGTTTGAGAGGAGACCTAAGTCGCTGGCTGTTTGAGATCAAGGCGGGG
GTCTTTGTCGGTCGCGTCTC

Product: CRISPR-associated Cas1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MIAKTTTKSLRSIPKVRDSISFVYVERCRIEQDAKAIAVLQEDGRYIIPCASLTTLMLGPGTAITHAAIKNLADGLCSVQ
WVGEDGLRFYASGSHPSSSVERLYHQAKLWADPVQHMEVVRRMYSFRFPEPLKEGLTLEQIRGLEGVRVRTVYSRLSKET
GVNWKGRSYKLKEWECADPVNRALSVANTCLYAVCQAALNAVGYSTALGFIHIGKPLSFVYDVADLYKTEITIPVAFKAA
AELMPNFESRTRQLCREKFVEHRLMQRIIDDVDAILGFRATQEESSPVGSLWDNEKGAVEGGVSYGEELDEEMSV

Sequences:

>Translated_315_residues
MIAKTTTKSLRSIPKVRDSISFVYVERCRIEQDAKAIAVLQEDGRYIIPCASLTTLMLGPGTAITHAAIKNLADGLCSVQ
WVGEDGLRFYASGSHPSSSVERLYHQAKLWADPVQHMEVVRRMYSFRFPEPLKEGLTLEQIRGLEGVRVRTVYSRLSKET
GVNWKGRSYKLKEWECADPVNRALSVANTCLYAVCQAALNAVGYSTALGFIHIGKPLSFVYDVADLYKTEITIPVAFKAA
AELMPNFESRTRQLCREKFVEHRLMQRIIDDVDAILGFRATQEESSPVGSLWDNEKGAVEGGVSYGEELDEEMSV
>Mature_315_residues
MIAKTTTKSLRSIPKVRDSISFVYVERCRIEQDAKAIAVLQEDGRYIIPCASLTTLMLGPGTAITHAAIKNLADGLCSVQ
WVGEDGLRFYASGSHPSSSVERLYHQAKLWADPVQHMEVVRRMYSFRFPEPLKEGLTLEQIRGLEGVRVRTVYSRLSKET
GVNWKGRSYKLKEWECADPVNRALSVANTCLYAVCQAALNAVGYSTALGFIHIGKPLSFVYDVADLYKTEITIPVAFKAA
AELMPNFESRTRQLCREKFVEHRLMQRIIDDVDAILGFRATQEESSPVGSLWDNEKGAVEGGVSYGEELDEEMSV

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=299, Percent_Identity=37.4581939799331, Blast_Score=211, Evalue=7e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 35208; Mature: 35208

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKTTTKSLRSIPKVRDSISFVYVERCRIEQDAKAIAVLQEDGRYIIPCASLTTLMLGP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEHHHHHHHHCCC
GTAITHAAIKNLADGLCSVQWVGEDGLRFYASGSHPSSSVERLYHQAKLWADPVQHMEVV
CHHHHHHHHHHHHHHHHEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHH
RRMYSFRFPEPLKEGLTLEQIRGLEGVRVRTVYSRLSKETGVNWKGRSYKLKEWECADPV
HHHHHCCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
NRALSVANTCLYAVCQAALNAVGYSTALGFIHIGKPLSFVYDVADLYKTEITIPVAFKAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEHHHHHH
AELMPNFESRTRQLCREKFVEHRLMQRIIDDVDAILGFRATQEESSPVGSLWDNEKGAVE
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
GGVSYGEELDEEMSV
CCHHHHHHHHHHHCC
>Mature Secondary Structure
MIAKTTTKSLRSIPKVRDSISFVYVERCRIEQDAKAIAVLQEDGRYIIPCASLTTLMLGP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEHHHHHHHHCCC
GTAITHAAIKNLADGLCSVQWVGEDGLRFYASGSHPSSSVERLYHQAKLWADPVQHMEVV
CHHHHHHHHHHHHHHHHEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHH
RRMYSFRFPEPLKEGLTLEQIRGLEGVRVRTVYSRLSKETGVNWKGRSYKLKEWECADPV
HHHHHCCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
NRALSVANTCLYAVCQAALNAVGYSTALGFIHIGKPLSFVYDVADLYKTEITIPVAFKAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEHHHHHH
AELMPNFESRTRQLCREKFVEHRLMQRIIDDVDAILGFRATQEESSPVGSLWDNEKGAVE
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
GGVSYGEELDEEMSV
CCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]