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The map label for this gene is yqgF [C]

Identifier: 86605420

GI number: 86605420

Start: 715289

End: 715768

Strand: Reverse

Name: yqgF [C]

Synonym: CYA_0707

Alternate gene names: 86605420

Gene position: 715768-715289 (Counterclockwise)

Preceding gene: 86605422

Following gene: 86605418

Centisome position: 24.41

GC content: 66.04

Gene sequence:

>480_bases
ATGTCAACAGACCTGAACTATTCTGCCACAAGGGATCCCTTTTCGGCGCTGGGGCTGGACGTGGGCAACCGCCGCATCGG
CGTGGCCGGCTCCGACGGGCTGGGGCTGCTGGCCACGGGGCTGGGGGTGATCCGGCGCCGTTCCCTGCCGGAAGATATCG
CCCAAGTGCAGGCGTGGATCCGCCGCCGCCAAGCCACCGTGGTGGTGGTCGGGATCCCGCTTTTGGCGGATGGATCGGTG
GGGTCCCAGGCCCGCAAGGTGCAGCGGTTTGTGCGGGCGCTGCAGGCGGCCGTGGATTTGCCGGTGGTTACGGTCAACGA
GTACCTGAGCACCGTACAGGCGGAGTGGGATCTGCGCCAGGCCGGGATCCCGGCTAAGGCCCAGAAAGCGCTTATCGACC
AGCAGTCGGCGGCAGTGATTCTCCAAACTTGGCTGGACGAGCGGCGCTATTCCCAGAGCTCAAAAGCGCCCTGCAGATAG

Upstream 100 bases:

>100_bases
CCAAAGAGAGTTGTCGAAAAAGGATAGAGGTTCAGCCGAGCTACACGGCCAGAGAGAGGGAGTTTCAGGCCGTTACAATG
TCGGCAAGAGGGACAAACAG

Downstream 100 bases:

>100_bases
TCTGCCAAAGCGTAGCTCACCCCTTCCTTGCCCGGTCGCTGTTCCACCAGCGCGACATCAAAGCGACAAGCTAGTTCAGC
AAGATCAGGGTGCTGGCTCA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSTDLNYSATRDPFSALGLDVGNRRIGVAGSDGLGLLATGLGVIRRRSLPEDIAQVQAWIRRRQATVVVVGIPLLADGSV
GSQARKVQRFVRALQAAVDLPVVTVNEYLSTVQAEWDLRQAGIPAKAQKALIDQQSAAVILQTWLDERRYSQSSKAPCR

Sequences:

>Translated_159_residues
MSTDLNYSATRDPFSALGLDVGNRRIGVAGSDGLGLLATGLGVIRRRSLPEDIAQVQAWIRRRQATVVVVGIPLLADGSV
GSQARKVQRFVRALQAAVDLPVVTVNEYLSTVQAEWDLRQAGIPAKAQKALIDQQSAAVILQTWLDERRYSQSSKAPCR
>Mature_158_residues
STDLNYSATRDPFSALGLDVGNRRIGVAGSDGLGLLATGLGVIRRRSLPEDIAQVQAWIRRRQATVVVVGIPLLADGSVG
SQARKVQRFVRALQAAVDLPVVTVNEYLSTVQAEWDLRQAGIPAKAQKALIDQQSAAVILQTWLDERRYSQSSKAPCR

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_SYNJA (Q2JWE3)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_474183.1
- ProteinModelPortal:   Q2JWE3
- SMR:   Q2JWE3
- STRING:   Q2JWE3
- GeneID:   3897211
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_0707
- TIGR:   CYA_0707
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- BioCyc:   SSP321327:CYA_0707-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17238; Mature: 17107

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDLNYSATRDPFSALGLDVGNRRIGVAGSDGLGLLATGLGVIRRRSLPEDIAQVQAWI
CCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
RRRQATVVVVGIPLLADGSVGSQARKVQRFVRALQAAVDLPVVTVNEYLSTVQAEWDLRQ
HHHCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHH
AGIPAKAQKALIDQQSAAVILQTWLDERRYSQSSKAPCR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
STDLNYSATRDPFSALGLDVGNRRIGVAGSDGLGLLATGLGVIRRRSLPEDIAQVQAWI
CCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
RRRQATVVVVGIPLLADGSVGSQARKVQRFVRALQAAVDLPVVTVNEYLSTVQAEWDLRQ
HHHCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHH
AGIPAKAQKALIDQQSAAVILQTWLDERRYSQSSKAPCR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA