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The map label for this gene is ydcM [C]

Identifier: 86605417

GI number: 86605417

Start: 712445

End: 713638

Strand: Reverse

Name: ydcM [C]

Synonym: CYA_0704

Alternate gene names: 86605417

Gene position: 713638-712445 (Counterclockwise)

Preceding gene: 86605418

Following gene: 86605415

Centisome position: 24.33

GC content: 55.36

Gene sequence:

>1194_bases
ATGAGTCAAGTCCTGACCATATCCTATAAGCTCAAGGTGTCCCCGTCGCAAGCCGCCAAATTGGACGCGACGATGGATGC
CTTTGTGCAGGCACTGAACTGGGTCAACCAGAACACGCCGGAGAAGATCGTCAACGCGGTCAAACTGCAATCCCTTTGCT
ACTACGAGATTCGAGCCCGGTTCGGCTTGTCCAGTAACTTGGCTCAACAGGTGTGCAGACGGGTGGCAGGCGCTCGCAAA
GTGGCAAGACAGCGCAACCGTCCAGTTAAAGAGTTCAAGCGTAGGTTCGTTACCTACGACGCACGTATCTTTTCATTCCG
CGAGAAAGACTGGACGGTGTCGCTGACCACGGTTGAAGGGAGAGAACGCTTTGAGCTAGCCATTGGCAACTACCAGCGTG
GGATGCTGGCTGGCTCTAACCCCAAATCGGCCACCCTAGTCCAGCGGAAGGACGGCTCCTACTACATCCAGATTTGCGTA
GAGAAAAACCCGCCCAAGCAACAAGATACTGACAGGGTGATCGGGGTGGACTTGGGCAGGACGGATATCGCCCATACGTC
AGAGGGGGACAATTGGAATGGACAGCAGTTGAACCGAGTCCGCGACCACTACTCCAAGCTGAGGGCGGTACTCCAACGCA
AAGCCAGTAAGGGCACCCGCAGTTCGCGGCGCAGATGCCGTCAACTGTTGCAACGGCTGTCTGGCAAGGAAAGACGCTTT
CAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGGCGACAAACAGCGCTCTTGCTCTGGAAGA
CTTGACAGGGATTCGGGAAAGGGTCAATCAACAGCCCCGCAGCAAGACAGAGCGTAGGCGGGCAAATAGTTGGGCGTTTT
ATCAACTCCGTCAATTTTTGGAGTACAAGGCTCTGCGTGCGGGGGTTGCTCTGATTCTTGTTCCGCCTGCCTACACGTCG
CAGACCTGCCACCGGTGTTTGCACATTCATCCCGATCCTGCGCAATCCTACCGCAGTGGCAAGTCGTTCAAGTGTGGGCA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTGGGGGCTGCTGTAAACCAGCCTAGAG
GTTCGGGCTTGTTTTGTTCTCTGGTAGAGCAGAACAGGCTCAGGGCTACTGAAAGCCCGCTCCGTACCGCTTAG

Upstream 100 bases:

>100_bases
CTGCTGGGATCCGGGATCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGCCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGCCGGGTAGTTTACAAGTTCCTGGAAGCTGCTGTTGCGGCCTCCGTAGCGCAGGTGCATGTGCACCGGATCC
CCGTGGGGTGCCCGCAGAAT

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MSQVLTISYKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICV
EKNPPKQQDTDRVIGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSKLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKALRAGVALILVPPAYTS
QTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQNRLRATESPLRTA

Sequences:

>Translated_397_residues
MSQVLTISYKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICV
EKNPPKQQDTDRVIGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSKLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKALRAGVALILVPPAYTS
QTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQNRLRATESPLRTA
>Mature_396_residues
SQVLTISYKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARKV
ARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVE
KNPPKQQDTDRVIGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSKLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRFQ
AWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKALRAGVALILVPPAYTSQ
TCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQNRLRATESPLRTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=234, Percent_Identity=28.6324786324786, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45081; Mature: 44950

Theoretical pI: Translated: 11.05; Mature: 11.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTISYKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVEKNPPKQQDTDRVIGVDLGR
CCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRVRDHYSKLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKALRAGVALILVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCH
VIALLGAAVNQPRGSGLFCSLVEQNRLRATESPLRTA
HHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SQVLTISYKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVEKNPPKQQDTDRVIGVDLGR
CCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRVRDHYSKLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKALRAGVALILVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCH
VIALLGAAVNQPRGSGLFCSLVEQNRLRATESPLRTA
HHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]