| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605352
Identifier: 86605352
GI number: 86605352
Start: 648407
End: 649717
Strand: Reverse
Name: 86605352
Synonym: CYA_0638
Alternate gene names: NA
Gene position: 649717-648407 (Counterclockwise)
Preceding gene: 86605353
Following gene: 86605351
Centisome position: 22.15
GC content: 55.61
Gene sequence:
>1311_bases ATGACGACGACCCTGGTTACGCCCAAGCTCCCCCCTTCCACCCATCCCTTTGCCGAGGTGGTGCATCGCCTCGAGGCAGG GGGATCGATGCTGCCGGATACGCCGGAAAACCTGATGCAAATTATCGGCCTCTACAAAGCCTATGCGGTGCCGATGGACT TTTACTGGCGCGATCTGCTCTACATTGCCGAGCAGGTGTTTGTGGATCCCTTGCCCTTTTTTAAGTTCATCATTCCCGAA GAATATTTGAAGCTGGCCAACCACTACGCGGGGGATAATGCCGATTTGCGCATTTGGCGCGGCCCCGCTACGGCCCACCC GGAACTGCTGGAGTTCATGGAAAAAGGGGAGCTCAAGCGCAAGCTGCCGCGGATTTTGCATCACCTTTGGCATGACCGCA TCAACATGGAATTTGCCGAAGAATGTATGCGGGCCATGCTCTGGCACCGGGATATGGGGGGCCTGCTGGATCCCTATATG GATTCGGAAGAATACAAGCAAAATGCCGACCGCGCCATCCGCGCCTACTGCCAAGGCAACCCTCTGTTGATGGGGCTATA CAAGCTCTTCCCAGACATGTTTTTAGAGCTATGCCGCCAGGCCACCATGTATTCAGTGCTGGGACTCTTTTGGGAGGTGA TGGCGCCGGTTTTCTTTGAAATGAGCGATCTCTACGACGAGGGCAAAATTACCAGCGTGCCGGAGGCGATGAACTTCTTG GTCAGGGGGATCTTCGCCGTTGCCGGACGGCCCATTTATCACCGGGTGCGCATCCGCGGAGAATGGTACGATATTGTGCC CAAATCCAAGGGATTTACCTGGCTATACGAGGCGGCTTTCCCCTACGTAGAGGCGGTGTTTTATCGCTCTTCTCCCTTCC GCGGCACCAAGTCCTATAACGCCCAGGCCAACCAAGTGCCCGTTAACCAGTTGGACTTTCACTACGGGGTTCTCTACGCC GACAAGTTTCCCGTGGCCAGTGCCGGGATCCCGCCGACCCTTTTGCACCAGGATATGTACCACTTTTTGCCCCAGTATTT GGTGGAGTATTACCGCAAGCATTGCCGTGGTGAAGACGACATGCTGATCCAGCTTGGGATCAGCTTCCAGCGCTCCATGT ACAACGTTACTTCAGCCGTGATCCAGGCGGGGAGAGCCGCTTTCTTGTATCCTCTGGACGATCCCAACCCGCGGCATTTG ATGATGAACCGCCGTTATTTTGAGGGACAGCTCAATCGCTTCACCCGACCGGAATACGGCATCCGCGAGGCAGCCCGCCT CTCCTATATTCAGGATCAAAACTACCGCTAG
Upstream 100 bases:
>100_bases TTCTTCTCCCTCCAGTTTGCTGCAGGGATCCCTGATGGACAACGCAAGCTCATGACTTTCTCCCCTAGCCGAAGGCAGTG AAGAGTTGGAGACTTTTTCC
Downstream 100 bases:
>100_bases TTGAGGACAATTACGCCGATTTCAGGTGGTCGGTTTTGGCTTTCCCTTTTCCCGATCCTGCTTGGACCCAACTGCTCTTC TGAACCTGCCGTCCAGACCT
Product: CO2 hydration protein
Products: NA
Alternate protein names: CO2 Hydration Protein ChpX; CO2-Hydration Protein; Carbon Dioxide Hydration Protein; CO2 Hydration; High Affinity CO2 Uptake Protein; Low Affinity CO2 Uptake Protein; Uptake
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MTTTLVTPKLPPSTHPFAEVVHRLEAGGSMLPDTPENLMQIIGLYKAYAVPMDFYWRDLLYIAEQVFVDPLPFFKFIIPE EYLKLANHYAGDNADLRIWRGPATAHPELLEFMEKGELKRKLPRILHHLWHDRINMEFAEECMRAMLWHRDMGGLLDPYM DSEEYKQNADRAIRAYCQGNPLLMGLYKLFPDMFLELCRQATMYSVLGLFWEVMAPVFFEMSDLYDEGKITSVPEAMNFL VRGIFAVAGRPIYHRVRIRGEWYDIVPKSKGFTWLYEAAFPYVEAVFYRSSPFRGTKSYNAQANQVPVNQLDFHYGVLYA DKFPVASAGIPPTLLHQDMYHFLPQYLVEYYRKHCRGEDDMLIQLGISFQRSMYNVTSAVIQAGRAAFLYPLDDPNPRHL MMNRRYFEGQLNRFTRPEYGIREAARLSYIQDQNYR
Sequences:
>Translated_436_residues MTTTLVTPKLPPSTHPFAEVVHRLEAGGSMLPDTPENLMQIIGLYKAYAVPMDFYWRDLLYIAEQVFVDPLPFFKFIIPE EYLKLANHYAGDNADLRIWRGPATAHPELLEFMEKGELKRKLPRILHHLWHDRINMEFAEECMRAMLWHRDMGGLLDPYM DSEEYKQNADRAIRAYCQGNPLLMGLYKLFPDMFLELCRQATMYSVLGLFWEVMAPVFFEMSDLYDEGKITSVPEAMNFL VRGIFAVAGRPIYHRVRIRGEWYDIVPKSKGFTWLYEAAFPYVEAVFYRSSPFRGTKSYNAQANQVPVNQLDFHYGVLYA DKFPVASAGIPPTLLHQDMYHFLPQYLVEYYRKHCRGEDDMLIQLGISFQRSMYNVTSAVIQAGRAAFLYPLDDPNPRHL MMNRRYFEGQLNRFTRPEYGIREAARLSYIQDQNYR >Mature_435_residues TTTLVTPKLPPSTHPFAEVVHRLEAGGSMLPDTPENLMQIIGLYKAYAVPMDFYWRDLLYIAEQVFVDPLPFFKFIIPEE YLKLANHYAGDNADLRIWRGPATAHPELLEFMEKGELKRKLPRILHHLWHDRINMEFAEECMRAMLWHRDMGGLLDPYMD SEEYKQNADRAIRAYCQGNPLLMGLYKLFPDMFLELCRQATMYSVLGLFWEVMAPVFFEMSDLYDEGKITSVPEAMNFLV RGIFAVAGRPIYHRVRIRGEWYDIVPKSKGFTWLYEAAFPYVEAVFYRSSPFRGTKSYNAQANQVPVNQLDFHYGVLYAD KFPVASAGIPPTLLHQDMYHFLPQYLVEYYRKHCRGEDDMLIQLGISFQRSMYNVTSAVIQAGRAAFLYPLDDPNPRHLM MNRRYFEGQLNRFTRPEYGIREAARLSYIQDQNYR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51074; Mature: 50942
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTLVTPKLPPSTHPFAEVVHRLEAGGSMLPDTPENLMQIIGLYKAYAVPMDFYWRDLL CCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH YIAEQVFVDPLPFFKFIIPEEYLKLANHYAGDNADLRIWRGPATAHPELLEFMEKGELKR HHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCHHHH KLPRILHHLWHDRINMEFAEECMRAMLWHRDMGGLLDPYMDSEEYKQNADRAIRAYCQGN HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC PLLMGLYKLFPDMFLELCRQATMYSVLGLFWEVMAPVFFEMSDLYDEGKITSVPEAMNFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH VRGIFAVAGRPIYHRVRIRGEWYDIVPKSKGFTWLYEAAFPYVEAVFYRSSPFRGTKSYN HHHHHHHHCCCEEEEEEEECCEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCC AQANQVPVNQLDFHYGVLYADKFPVASAGIPPTLLHQDMYHFLPQYLVEYYRKHCRGEDD CCCCCCCCHHHCHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC MLIQLGISFQRSMYNVTSAVIQAGRAAFLYPLDDPNPRHLMMNRRYFEGQLNRFTRPEYG EEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHCCCCCCC IREAARLSYIQDQNYR HHHHHHHHHHHCCCCC >Mature Secondary Structure TTTLVTPKLPPSTHPFAEVVHRLEAGGSMLPDTPENLMQIIGLYKAYAVPMDFYWRDLL CCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH YIAEQVFVDPLPFFKFIIPEEYLKLANHYAGDNADLRIWRGPATAHPELLEFMEKGELKR HHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCHHHH KLPRILHHLWHDRINMEFAEECMRAMLWHRDMGGLLDPYMDSEEYKQNADRAIRAYCQGN HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC PLLMGLYKLFPDMFLELCRQATMYSVLGLFWEVMAPVFFEMSDLYDEGKITSVPEAMNFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH VRGIFAVAGRPIYHRVRIRGEWYDIVPKSKGFTWLYEAAFPYVEAVFYRSSPFRGTKSYN HHHHHHHHCCCEEEEEEEECCEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCC AQANQVPVNQLDFHYGVLYADKFPVASAGIPPTLLHQDMYHFLPQYLVEYYRKHCRGEDD CCCCCCCCHHHCHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC MLIQLGISFQRSMYNVTSAVIQAGRAAFLYPLDDPNPRHLMMNRRYFEGQLNRFTRPEYG EEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHCCCCCCC IREAARLSYIQDQNYR HHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA