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The map label for this gene is ydcM [C]

Identifier: 86605336

GI number: 86605336

Start: 629981

End: 631174

Strand: Reverse

Name: ydcM [C]

Synonym: CYA_0620

Alternate gene names: 86605336

Gene position: 631174-629981 (Counterclockwise)

Preceding gene: 86605337

Following gene: 86605333

Centisome position: 21.52

GC content: 55.86

Gene sequence:

>1194_bases
ATGAGCCAAGTCCTGACCGTCTCCTGTAAGCTCAAGGCATCCCAGTCGCAAGCCGCCAAATTGGACGCGACGATGGATGT
CTTTGTGCAGGCATTGAACTGGGTCAACCAGAACACGCCGGAGAAGATCGTCAACGCGGTCAAACTGCAATCCCTTTGCT
ACTACGAGATTCGAGCCCGGTTCGGCTTGTCCAGTAACTTGGCTCAACAGGTGTGCAGACGGGTGGCAGGCGCTCGCAAA
GTGGCGAGACAGCGCAACCGTCCGGTTAAAGAGTTCAAGCGTAGGTTCGTTACCTACGATGCACGTATCTTTTCATTCCG
CAAGAAAGACTGGACGGTGTCGCTCACCACGGTGGAGGGTCGGGAGCGCTTTGAGCTGGCGATTGGCCGCTACCAGAGAG
AACAGCTGGCGGGCTCCAATCCCAAATCTGCCACTCTGGTCAAGCGTAAAGACGGCTCCTACTCTATTCAGATCTGTGTG
GAAGCGGAGCCATCCCCACCGCAACGCACGGATAGAGTGCTAGGCGTGGATTTGGGCAGGACGGATATTGCCCATACGTC
AGAAGGGGATAACTGGAATGGACAGCAGTTGAACCGAATCCGAGACCACTACTCCAAGCTGAGGGCGGCACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGGCTGTCTGGCAAGGAGAGGCGCTTT
CAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGGCGACAAACAGCGCTATTGCTCTGGAAGA
CTTGACAGGGATCCGGGAAAGGGTCAATCAACAGCCGCGCAACAAGGCCGAACGGCGCAGAACCAACAGTTGGGCGTTCT
ACCAACTACGTCAGTTTCTGGAATACAAGGCGAGGGTTGCAGGGGTTTCTCTGATTCTTGTTCCGCCTGCCTACACGTCG
CAGACCTGCCACCGGTGTTTGCACATCCATCCCGATCCTGCGCAATCCTACCGCAGTGGCAAGTCGTTCAAGTGTGGGCA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTGGGGGCTGTCGTAAACCAGCCTAGAG
GTTCGGGCCTGTTTTGTTCTCTGGTAGAGCAGAACAGGCTCAGGGCTACTGAAAGCCCGCTACGTACCGCTTAG

Upstream 100 bases:

>100_bases
TCTCTCTCAAATAGATTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGCCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGCCGGGTAGTTTACGCCAAACTCTCGCAGAGCGGGCAAGAAATTTTTGTTTTCGTGATGGGATCGGCTCAAC
TTCAGCAAGGCAAATCTCTG

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MSQVLTVSCKLKASQSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFRKKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTDRVLGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRNKAERRRTNSWAFYQLRQFLEYKARVAGVSLILVPPAYTS
QTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA

Sequences:

>Translated_397_residues
MSQVLTVSCKLKASQSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFRKKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTDRVLGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRNKAERRRTNSWAFYQLRQFLEYKARVAGVSLILVPPAYTS
QTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA
>Mature_396_residues
SQVLTVSCKLKASQSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARKV
ARQRNRPVKEFKRRFVTYDARIFSFRKKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVE
AEPSPPQRTDRVLGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRFQ
AWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRNKAERRRTNSWAFYQLRQFLEYKARVAGVSLILVPPAYTSQ
TCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=233, Percent_Identity=29.6137339055794, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45043; Mature: 44912

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTVSCKLKASQSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFRKKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCEEEEEEEECC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTDRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCHHCCEEEEECCC
TDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRNKAERRRTNSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARVAGVSLILVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA
HHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SQVLTVSCKLKASQSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFRKKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCEEEEEEEECC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTDRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCHHCCEEEEECCC
TDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRNKAERRRTNSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARVAGVSLILVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA
HHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]