Click here to switch to the map view.

The map label for this gene is rbpA [H]

Identifier: 86605228

GI number: 86605228

Start: 529494

End: 529808

Strand: Reverse

Name: rbpA [H]

Synonym: CYA_0511

Alternate gene names: 86605228

Gene position: 529808-529494 (Counterclockwise)

Preceding gene: 86605229

Following gene: 86605223

Centisome position: 18.07

GC content: 60.0

Gene sequence:

>315_bases
ATGTCGATTTATGTAGGTAACCTTTCCTTTAAGGTGACGGAAGCGGAATTGACCGCTGTGTTTGCCGAGTACGGTTCTGT
GAAGCGGGTGCAGATCCCCACCGACCGCGAGACGGGCCGCATCCGCGGCTTTGGGTTTGTGGAAATGAGCTCTGAGGCCG
AAGAGCAGGCTGCCATTGCCGCTCTGGATGGCGCGGAATGGATGGGCCGCGACCTCAAGGTCAACAAGGCTCGCCCGCGG
GAAGAACGCCCCACCTCCGGTTTCCGCTCTGGTAACGGCGGCGAGCGGCGGCGCAACTTCCAATCTCGCTATTAA

Upstream 100 bases:

>100_bases
TAGCGTTCGGTTCTTCCGGTCTGGACGGGTTTTCACGTTTTGTATTGGCAGACGGCTCTCCGAATATCTCGCTTGTTCCT
CTCTCTTTCGGAGATCGTCG

Downstream 100 bases:

>100_bases
CTCGCTATTAAAACGTCAACCCCTCACCCCCGGCCCCTCTCCCAGAGGGAGAGGGGGGTTGGGGATCGAGACAACGAGCC
TTTTCTTGCAACTAAGCCGG

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MSIYVGNLSFKVTEAELTAVFAEYGSVKRVQIPTDRETGRIRGFGFVEMSSEAEEQAAIAALDGAEWMGRDLKVNKARPR
EERPTSGFRSGNGGERRRNFQSRY

Sequences:

>Translated_104_residues
MSIYVGNLSFKVTEAELTAVFAEYGSVKRVQIPTDRETGRIRGFGFVEMSSEAEEQAAIAALDGAEWMGRDLKVNKARPR
EERPTSGFRSGNGGERRRNFQSRY
>Mature_103_residues
SIYVGNLSFKVTEAELTAVFAEYGSVKRVQIPTDRETGRIRGFGFVEMSSEAEEQAAIAALDGAEWMGRDLKVNKARPRE
ERPTSGFRSGNGGERRRNFQSRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4502847, Length=90, Percent_Identity=36.6666666666667, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI35493811, Length=82, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI4757926, Length=82, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=39.4736842105263, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=38.1578947368421, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI15055543, Length=78, Percent_Identity=41.025641025641, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=46.3414634146341, Blast_Score=78, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=48.0519480519481, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=50.6493506493506, Blast_Score=76, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17539498, Length=89, Percent_Identity=38.2022471910112, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=38.1578947368421, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=39.7435897435897, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24582417, Length=90, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45550943, Length=90, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582419, Length=90, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582423, Length=90, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582421, Length=90, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19920866, Length=88, Percent_Identity=34.0909090909091, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582412, Length=88, Percent_Identity=34.0909090909091, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=36.5853658536585, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11680; Mature: 11549

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYVGNLSFKVTEAELTAVFAEYGSVKRVQIPTDRETGRIRGFGFVEMSSEAEEQAAIA
CEEEECCEEEEEEHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEECCCCCHHHEEE
ALDGAEWMGRDLKVNKARPREERPTSGFRSGNGGERRRNFQSRY
EECCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure 
SIYVGNLSFKVTEAELTAVFAEYGSVKRVQIPTDRETGRIRGFGFVEMSSEAEEQAAIA
EEEECCEEEEEEHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEECCCCCHHHEEE
ALDGAEWMGRDLKVNKARPREERPTSGFRSGNGGERRRNFQSRY
EECCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704138; 8590279; 8905231 [H]