| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605216
Identifier: 86605216
GI number: 86605216
Start: 512911
End: 514188
Strand: Reverse
Name: 86605216
Synonym: CYA_0498
Alternate gene names: NA
Gene position: 514188-512911 (Counterclockwise)
Preceding gene: 86605217
Following gene: 86605215
Centisome position: 17.53
GC content: 56.42
Gene sequence:
>1278_bases ATGAGCTTCCCTCCTAGCCACCTCTTGCAGCACAGCCGGCAGCATCTGGTCTCTTTTGCCGTCCAAGTTTTGCTTCCCGC TGTGGCTTTGACGCTGCTGCAGATTTTCTTGATCTCCTTTTGGAGCCAGGAGGATGACTATGCTTCCATCTTCAAGGGTT TAACCCAGCGCGATAGCTACTGGTACCTGAGCATTGTGGAGCGGGGGTATCAGTTTGTGGGCTTTGACAAGATTGCCTAC GAGCAGAGCAATGTGGCCTTCTTTCCAGGCTATCCCCTGGCGGTGGCCGCCATGAGCCGCCTGTTGGGAGTTGACCCTGA ACTGGGGCTTTATCTCACTGCCCAGCTCTTTTGCTGGCTGATGTGGATTTACCTTTTCCTGTTTTACCGCCGCTGGCAGA TCCCCACTCTTTGGCAAGTTTTGGCAAGTCTGATTATCTTGGTCTATCCCAGCAGTTTTTACCTTGTCGTGGGCTACAGC GAATCCCTCTTCATGGCCAGCTTGTTGGGTTTTTTCTACTGGTTGGCCTGCTTGAATTCGATGAAGGCAGGGCTCCTGGC CGGGATCCACGGTTTTGCGATGAGTGCCACCCGCATTGTGGGTTTGCCGGTGGCGCTGGTTCCCCTGCTGCGGCTATCCC GCCGTTGGTTTTGGACGGCAGGCGCCGTTGTTTTGGCCTTGTTGGGGGGGCTGAGTTTTTTCCTCTACTGTCAGCTCCGC TTCGGTCGCTGGGATCTCTACATGGAGATGCAGCGCTACTTTACCGGCGTCCAGGCCAATTACCAAGCCCTTTTCCAGGC TCATACCTATGTTCTTTCCCCTGAGCGATGGCAGGTCTTGCTCTCTCCTTCTGCACCGCTGCAGGATCCTGGCCTGTGGT CTGATGCTCTCAGCCAACTGTTTGTGTCTGTTACGCTGGGATCCCTAGTTGTTACAGGCTTGCTGGATGGTTTGAGTGTC GTGGCCGGTAAGAGCCGGCGCTGGCAGGAGCGGCTGGGGTTTCACCTAGCTGCCTGGGCTATGTTCTACATCGCTGTAGC CGGCATGAGTCCCCTAGGCCAGCGAAGCATGATTCGCTACTGCCTACCGGTTCACCTCGTGCAAGTGCTGGCCCTCCTGC ACTGGGCCAAGCACACAGATTTCGGCTTCCTTCCCCTGTGGGCGCGCCCCCACCTAAGCAGAGTTCTCAAGCTGGGCTAT GGGCTTCTGGGCCTGATCTTCCTCGTCCTCAACCAGATCTTGACCTGGCGCTACGTCCACCATCTCTGGGTGGCTTGA
Upstream 100 bases:
>100_bases ACATTCTCCAACCCGGCAGCCACGATCTCTGGCAGGTGAACTCCGATGACGATTACCAAGAGGAGATTAAAGTGCCATCC CCACCCGCAAAGGTGCGACA
Downstream 100 bases:
>100_bases CCCTGCTTTCTTGAGGATAGGATGTGAGGGATCCCGACTTCTCACCGACTGAGAGCTGTGGCGTTTTCCTCTCCCCACAA GTGGCCTCGGCAGAAATCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MSFPPSHLLQHSRQHLVSFAVQVLLPAVALTLLQIFLISFWSQEDDYASIFKGLTQRDSYWYLSIVERGYQFVGFDKIAY EQSNVAFFPGYPLAVAAMSRLLGVDPELGLYLTAQLFCWLMWIYLFLFYRRWQIPTLWQVLASLIILVYPSSFYLVVGYS ESLFMASLLGFFYWLACLNSMKAGLLAGIHGFAMSATRIVGLPVALVPLLRLSRRWFWTAGAVVLALLGGLSFFLYCQLR FGRWDLYMEMQRYFTGVQANYQALFQAHTYVLSPERWQVLLSPSAPLQDPGLWSDALSQLFVSVTLGSLVVTGLLDGLSV VAGKSRRWQERLGFHLAAWAMFYIAVAGMSPLGQRSMIRYCLPVHLVQVLALLHWAKHTDFGFLPLWARPHLSRVLKLGY GLLGLIFLVLNQILTWRYVHHLWVA
Sequences:
>Translated_425_residues MSFPPSHLLQHSRQHLVSFAVQVLLPAVALTLLQIFLISFWSQEDDYASIFKGLTQRDSYWYLSIVERGYQFVGFDKIAY EQSNVAFFPGYPLAVAAMSRLLGVDPELGLYLTAQLFCWLMWIYLFLFYRRWQIPTLWQVLASLIILVYPSSFYLVVGYS ESLFMASLLGFFYWLACLNSMKAGLLAGIHGFAMSATRIVGLPVALVPLLRLSRRWFWTAGAVVLALLGGLSFFLYCQLR FGRWDLYMEMQRYFTGVQANYQALFQAHTYVLSPERWQVLLSPSAPLQDPGLWSDALSQLFVSVTLGSLVVTGLLDGLSV VAGKSRRWQERLGFHLAAWAMFYIAVAGMSPLGQRSMIRYCLPVHLVQVLALLHWAKHTDFGFLPLWARPHLSRVLKLGY GLLGLIFLVLNQILTWRYVHHLWVA >Mature_424_residues SFPPSHLLQHSRQHLVSFAVQVLLPAVALTLLQIFLISFWSQEDDYASIFKGLTQRDSYWYLSIVERGYQFVGFDKIAYE QSNVAFFPGYPLAVAAMSRLLGVDPELGLYLTAQLFCWLMWIYLFLFYRRWQIPTLWQVLASLIILVYPSSFYLVVGYSE SLFMASLLGFFYWLACLNSMKAGLLAGIHGFAMSATRIVGLPVALVPLLRLSRRWFWTAGAVVLALLGGLSFFLYCQLRF GRWDLYMEMQRYFTGVQANYQALFQAHTYVLSPERWQVLLSPSAPLQDPGLWSDALSQLFVSVTLGSLVVTGLLDGLSVV AGKSRRWQERLGFHLAAWAMFYIAVAGMSPLGQRSMIRYCLPVHLVQVLALLHWAKHTDFGFLPLWARPHLSRVLKLGYG LLGLIFLVLNQILTWRYVHHLWVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48564; Mature: 48433
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFPPSHLLQHSRQHLVSFAVQVLLPAVALTLLQIFLISFWSQEDDYASIFKGLTQRDSY CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC WYLSIVERGYQFVGFDKIAYEQSNVAFFPGYPLAVAAMSRLLGVDPELGLYLTAQLFCWL EEHHHHHCCCCEECCHHHHEECCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH MWIYLFLFYRRWQIPTLWQVLASLIILVYPSSFYLVVGYSESLFMASLLGFFYWLACLNS HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH MKAGLLAGIHGFAMSATRIVGLPVALVPLLRLSRRWFWTAGAVVLALLGGLSFFLYCQLR HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGRWDLYMEMQRYFTGVQANYQALFQAHTYVLSPERWQVLLSPSAPLQDPGLWSDALSQL CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCCHHHHHHHH FVSVTLGSLVVTGLLDGLSVVAGKSRRWQERLGFHLAAWAMFYIAVAGMSPLGQRSMIRY HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHH CLPVHLVQVLALLHWAKHTDFGFLPLWARPHLSRVLKLGYGLLGLIFLVLNQILTWRYVH HHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HLWVA HHHCC >Mature Secondary Structure SFPPSHLLQHSRQHLVSFAVQVLLPAVALTLLQIFLISFWSQEDDYASIFKGLTQRDSY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC WYLSIVERGYQFVGFDKIAYEQSNVAFFPGYPLAVAAMSRLLGVDPELGLYLTAQLFCWL EEHHHHHCCCCEECCHHHHEECCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH MWIYLFLFYRRWQIPTLWQVLASLIILVYPSSFYLVVGYSESLFMASLLGFFYWLACLNS HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH MKAGLLAGIHGFAMSATRIVGLPVALVPLLRLSRRWFWTAGAVVLALLGGLSFFLYCQLR HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGRWDLYMEMQRYFTGVQANYQALFQAHTYVLSPERWQVLLSPSAPLQDPGLWSDALSQL CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCCHHHHHHHH FVSVTLGSLVVTGLLDGLSVVAGKSRRWQERLGFHLAAWAMFYIAVAGMSPLGQRSMIRY HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHH CLPVHLVQVLALLHWAKHTDFGFLPLWARPHLSRVLKLGYGLLGLIFLVLNQILTWRYVH HHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HLWVA HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA