Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86605216

Identifier: 86605216

GI number: 86605216

Start: 512911

End: 514188

Strand: Reverse

Name: 86605216

Synonym: CYA_0498

Alternate gene names: NA

Gene position: 514188-512911 (Counterclockwise)

Preceding gene: 86605217

Following gene: 86605215

Centisome position: 17.53

GC content: 56.42

Gene sequence:

>1278_bases
ATGAGCTTCCCTCCTAGCCACCTCTTGCAGCACAGCCGGCAGCATCTGGTCTCTTTTGCCGTCCAAGTTTTGCTTCCCGC
TGTGGCTTTGACGCTGCTGCAGATTTTCTTGATCTCCTTTTGGAGCCAGGAGGATGACTATGCTTCCATCTTCAAGGGTT
TAACCCAGCGCGATAGCTACTGGTACCTGAGCATTGTGGAGCGGGGGTATCAGTTTGTGGGCTTTGACAAGATTGCCTAC
GAGCAGAGCAATGTGGCCTTCTTTCCAGGCTATCCCCTGGCGGTGGCCGCCATGAGCCGCCTGTTGGGAGTTGACCCTGA
ACTGGGGCTTTATCTCACTGCCCAGCTCTTTTGCTGGCTGATGTGGATTTACCTTTTCCTGTTTTACCGCCGCTGGCAGA
TCCCCACTCTTTGGCAAGTTTTGGCAAGTCTGATTATCTTGGTCTATCCCAGCAGTTTTTACCTTGTCGTGGGCTACAGC
GAATCCCTCTTCATGGCCAGCTTGTTGGGTTTTTTCTACTGGTTGGCCTGCTTGAATTCGATGAAGGCAGGGCTCCTGGC
CGGGATCCACGGTTTTGCGATGAGTGCCACCCGCATTGTGGGTTTGCCGGTGGCGCTGGTTCCCCTGCTGCGGCTATCCC
GCCGTTGGTTTTGGACGGCAGGCGCCGTTGTTTTGGCCTTGTTGGGGGGGCTGAGTTTTTTCCTCTACTGTCAGCTCCGC
TTCGGTCGCTGGGATCTCTACATGGAGATGCAGCGCTACTTTACCGGCGTCCAGGCCAATTACCAAGCCCTTTTCCAGGC
TCATACCTATGTTCTTTCCCCTGAGCGATGGCAGGTCTTGCTCTCTCCTTCTGCACCGCTGCAGGATCCTGGCCTGTGGT
CTGATGCTCTCAGCCAACTGTTTGTGTCTGTTACGCTGGGATCCCTAGTTGTTACAGGCTTGCTGGATGGTTTGAGTGTC
GTGGCCGGTAAGAGCCGGCGCTGGCAGGAGCGGCTGGGGTTTCACCTAGCTGCCTGGGCTATGTTCTACATCGCTGTAGC
CGGCATGAGTCCCCTAGGCCAGCGAAGCATGATTCGCTACTGCCTACCGGTTCACCTCGTGCAAGTGCTGGCCCTCCTGC
ACTGGGCCAAGCACACAGATTTCGGCTTCCTTCCCCTGTGGGCGCGCCCCCACCTAAGCAGAGTTCTCAAGCTGGGCTAT
GGGCTTCTGGGCCTGATCTTCCTCGTCCTCAACCAGATCTTGACCTGGCGCTACGTCCACCATCTCTGGGTGGCTTGA

Upstream 100 bases:

>100_bases
ACATTCTCCAACCCGGCAGCCACGATCTCTGGCAGGTGAACTCCGATGACGATTACCAAGAGGAGATTAAAGTGCCATCC
CCACCCGCAAAGGTGCGACA

Downstream 100 bases:

>100_bases
CCCTGCTTTCTTGAGGATAGGATGTGAGGGATCCCGACTTCTCACCGACTGAGAGCTGTGGCGTTTTCCTCTCCCCACAA
GTGGCCTCGGCAGAAATCGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MSFPPSHLLQHSRQHLVSFAVQVLLPAVALTLLQIFLISFWSQEDDYASIFKGLTQRDSYWYLSIVERGYQFVGFDKIAY
EQSNVAFFPGYPLAVAAMSRLLGVDPELGLYLTAQLFCWLMWIYLFLFYRRWQIPTLWQVLASLIILVYPSSFYLVVGYS
ESLFMASLLGFFYWLACLNSMKAGLLAGIHGFAMSATRIVGLPVALVPLLRLSRRWFWTAGAVVLALLGGLSFFLYCQLR
FGRWDLYMEMQRYFTGVQANYQALFQAHTYVLSPERWQVLLSPSAPLQDPGLWSDALSQLFVSVTLGSLVVTGLLDGLSV
VAGKSRRWQERLGFHLAAWAMFYIAVAGMSPLGQRSMIRYCLPVHLVQVLALLHWAKHTDFGFLPLWARPHLSRVLKLGY
GLLGLIFLVLNQILTWRYVHHLWVA

Sequences:

>Translated_425_residues
MSFPPSHLLQHSRQHLVSFAVQVLLPAVALTLLQIFLISFWSQEDDYASIFKGLTQRDSYWYLSIVERGYQFVGFDKIAY
EQSNVAFFPGYPLAVAAMSRLLGVDPELGLYLTAQLFCWLMWIYLFLFYRRWQIPTLWQVLASLIILVYPSSFYLVVGYS
ESLFMASLLGFFYWLACLNSMKAGLLAGIHGFAMSATRIVGLPVALVPLLRLSRRWFWTAGAVVLALLGGLSFFLYCQLR
FGRWDLYMEMQRYFTGVQANYQALFQAHTYVLSPERWQVLLSPSAPLQDPGLWSDALSQLFVSVTLGSLVVTGLLDGLSV
VAGKSRRWQERLGFHLAAWAMFYIAVAGMSPLGQRSMIRYCLPVHLVQVLALLHWAKHTDFGFLPLWARPHLSRVLKLGY
GLLGLIFLVLNQILTWRYVHHLWVA
>Mature_424_residues
SFPPSHLLQHSRQHLVSFAVQVLLPAVALTLLQIFLISFWSQEDDYASIFKGLTQRDSYWYLSIVERGYQFVGFDKIAYE
QSNVAFFPGYPLAVAAMSRLLGVDPELGLYLTAQLFCWLMWIYLFLFYRRWQIPTLWQVLASLIILVYPSSFYLVVGYSE
SLFMASLLGFFYWLACLNSMKAGLLAGIHGFAMSATRIVGLPVALVPLLRLSRRWFWTAGAVVLALLGGLSFFLYCQLRF
GRWDLYMEMQRYFTGVQANYQALFQAHTYVLSPERWQVLLSPSAPLQDPGLWSDALSQLFVSVTLGSLVVTGLLDGLSVV
AGKSRRWQERLGFHLAAWAMFYIAVAGMSPLGQRSMIRYCLPVHLVQVLALLHWAKHTDFGFLPLWARPHLSRVLKLGYG
LLGLIFLVLNQILTWRYVHHLWVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48564; Mature: 48433

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFPPSHLLQHSRQHLVSFAVQVLLPAVALTLLQIFLISFWSQEDDYASIFKGLTQRDSY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
WYLSIVERGYQFVGFDKIAYEQSNVAFFPGYPLAVAAMSRLLGVDPELGLYLTAQLFCWL
EEHHHHHCCCCEECCHHHHEECCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MWIYLFLFYRRWQIPTLWQVLASLIILVYPSSFYLVVGYSESLFMASLLGFFYWLACLNS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
MKAGLLAGIHGFAMSATRIVGLPVALVPLLRLSRRWFWTAGAVVLALLGGLSFFLYCQLR
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGRWDLYMEMQRYFTGVQANYQALFQAHTYVLSPERWQVLLSPSAPLQDPGLWSDALSQL
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCCHHHHHHHH
FVSVTLGSLVVTGLLDGLSVVAGKSRRWQERLGFHLAAWAMFYIAVAGMSPLGQRSMIRY
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHH
CLPVHLVQVLALLHWAKHTDFGFLPLWARPHLSRVLKLGYGLLGLIFLVLNQILTWRYVH
HHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLWVA
HHHCC
>Mature Secondary Structure 
SFPPSHLLQHSRQHLVSFAVQVLLPAVALTLLQIFLISFWSQEDDYASIFKGLTQRDSY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
WYLSIVERGYQFVGFDKIAYEQSNVAFFPGYPLAVAAMSRLLGVDPELGLYLTAQLFCWL
EEHHHHHCCCCEECCHHHHEECCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MWIYLFLFYRRWQIPTLWQVLASLIILVYPSSFYLVVGYSESLFMASLLGFFYWLACLNS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
MKAGLLAGIHGFAMSATRIVGLPVALVPLLRLSRRWFWTAGAVVLALLGGLSFFLYCQLR
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGRWDLYMEMQRYFTGVQANYQALFQAHTYVLSPERWQVLLSPSAPLQDPGLWSDALSQL
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCCHHHHHHHH
FVSVTLGSLVVTGLLDGLSVVAGKSRRWQERLGFHLAAWAMFYIAVAGMSPLGQRSMIRY
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHH
CLPVHLVQVLALLHWAKHTDFGFLPLWARPHLSRVLKLGYGLLGLIFLVLNQILTWRYVH
HHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLWVA
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA