| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605172
Identifier: 86605172
GI number: 86605172
Start: 471065
End: 471580
Strand: Reverse
Name: 86605172
Synonym: CYA_0454
Alternate gene names: NA
Gene position: 471580-471065 (Counterclockwise)
Preceding gene: 86605173
Following gene: 86605170
Centisome position: 16.08
GC content: 64.53
Gene sequence:
>516_bases ATGACCGTTGCTTTCTCCTATCCCATCTTTGGCCCCAGCATTCAATGCCCCCACTGTCGGCAGACGATTGCGGCCCTTAC CCTGACCGATACCTACCTCTGCCATCGCCACGGCGCCTTTGAGGCAGATCCCGAGCAAGAGGAGCTGGTTCACCTGCAAT CAGGGCGGCGTTGGCGCCTCTGGGAAGGCCGCTGGTACCGCCAGCACACCCATGCCGATGGGATCCGCTTCGAGATTCAC GAAGAGCTGGATCGCCTGCGCATGCAGGGGATGCGGGCCACGCAGGTGATCGTGGCCGAGCGCTACCGCTCTTTGCTCAC CCCCTACCTGGAGCAGGGATCCCAGCGGCGCCCCGGCCCACCCCGCCTCTACGGCCTGCCGGTTAGCTTCAGCTCCCAGC TTCCTGAAGGAGCCGGTGGCTCGCCGCAGCGCTGGCGGGTGATCAACTTCGAGCTGATCTGCGAGCTGGATCCGGCCATG CGACAGCCGCAATCCCGGCTGCAGTTCTGTGACTAG
Upstream 100 bases:
>100_bases GGGATCCGCGTGAGCCAGATCTGCAAAAGGCCACACCTATAATTAATGTGGACAGCCGCGGATTTGCCCAGACACCCAGC CGCATTCTGTGGGGTTTCCT
Downstream 100 bases:
>100_bases CCCTGAGAAAGGCAAGGTCGGGCTTTAGAAGCGGCTAACCTGCCTGGGATCCCCCCTCCGGCTCAGGGGAGGCTATACCC CAGTAGGTGTAGCCGACCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MTVAFSYPIFGPSIQCPHCRQTIAALTLTDTYLCHRHGAFEADPEQEELVHLQSGRRWRLWEGRWYRQHTHADGIRFEIH EELDRLRMQGMRATQVIVAERYRSLLTPYLEQGSQRRPGPPRLYGLPVSFSSQLPEGAGGSPQRWRVINFELICELDPAM RQPQSRLQFCD
Sequences:
>Translated_171_residues MTVAFSYPIFGPSIQCPHCRQTIAALTLTDTYLCHRHGAFEADPEQEELVHLQSGRRWRLWEGRWYRQHTHADGIRFEIH EELDRLRMQGMRATQVIVAERYRSLLTPYLEQGSQRRPGPPRLYGLPVSFSSQLPEGAGGSPQRWRVINFELICELDPAM RQPQSRLQFCD >Mature_170_residues TVAFSYPIFGPSIQCPHCRQTIAALTLTDTYLCHRHGAFEADPEQEELVHLQSGRRWRLWEGRWYRQHTHADGIRFEIHE ELDRLRMQGMRATQVIVAERYRSLLTPYLEQGSQRRPGPPRLYGLPVSFSSQLPEGAGGSPQRWRVINFELICELDPAMR QPQSRLQFCD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19935; Mature: 19804
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVAFSYPIFGPSIQCPHCRQTIAALTLTDTYLCHRHGAFEADPEQEELVHLQSGRRWRL CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEE WEGRWYRQHTHADGIRFEIHEELDRLRMQGMRATQVIVAERYRSLLTPYLEQGSQRRPGP ECCCEEECCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC PRLYGLPVSFSSQLPEGAGGSPQRWRVINFELICELDPAMRQPQSRLQFCD CCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECCHHHCCCHHHCCCCC >Mature Secondary Structure TVAFSYPIFGPSIQCPHCRQTIAALTLTDTYLCHRHGAFEADPEQEELVHLQSGRRWRL EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEE WEGRWYRQHTHADGIRFEIHEELDRLRMQGMRATQVIVAERYRSLLTPYLEQGSQRRPGP ECCCEEECCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC PRLYGLPVSFSSQLPEGAGGSPQRWRVINFELICELDPAMRQPQSRLQFCD CCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECCHHHCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA