| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605134
Identifier: 86605134
GI number: 86605134
Start: 436363
End: 437094
Strand: Reverse
Name: 86605134
Synonym: CYA_0415
Alternate gene names: NA
Gene position: 437094-436363 (Counterclockwise)
Preceding gene: 86605135
Following gene: 86605133
Centisome position: 14.9
GC content: 58.88
Gene sequence:
>732_bases ATGGCCCCAGCGAACGTCCTGCCCAACACCCCCCCGTCCCCCACTGATGGGGGCGGCACTGCCCTAGACTACAGCAGCCC AAGGTATCGGCAGGCCTACTCCCGCATCAACGGTATTGTTATCGAAGGCGAACAAGAAGCCCACGACAACTACCTCAAGC TGGCCGAAATGCTGCCGGAAGCTGCAGAGGAGCTGCGCAAGCTGGCCAAGATGGAATTGCGCCACATGAAAGGCTTCCAG GCCTGCGGCAAAAACCTGCAGGTGGAACCCGATGTGGAGTTTGCCCGCGCCTTTTTCGCGCCCTTGCGGGACAATTTCCA AAGCGCCGCAGCGGCAGGGGATCTGGTCTCCTGTTTTGTCATTCAGTCTTTGATCATCGAGTGCTTTGCCATTGCCGCCT ACAACATCTACATCCCGGTTGCCGATGACTTTGCCCGCAAGATCACCGAGGGGGTAGTTAAGGACGAGTATCTGCACCTC AATTTTGGGGAGCGCTGGCTGGGCGAGCACTTTGCCGAGGTTAAAGCCCAGATCGAAGCAGCCAACGCCCAAAATCTGCC TCTAGTTCGGCAGATGCTGCAGCAGGTAGAGGCGGATGTGGAAGCCATTTACATGGATCGCGAGGCCATTGTAGAAGACT TCATGATCGCCTACGGCGAGGCCCTGGCCAGCATCGGCTTCAACACCCGCGAGGTAATGCGCCTCTCGGCCCAGGGTCTG CGGGCCGCCTGA
Upstream 100 bases:
>100_bases TTCTGAGTAGAGGAACAATTTAGTGGCAAGCGCCAGGATTGTTGAAGGGCCGGCGAAGCGGTTCACAACAATCTACAACT ACAAAAGGAGATGCACGAGT
Downstream 100 bases:
>100_bases CGCAACTCAACTCTGCCTGCCGATTGGTTTTCCGGCCTGGCTGGAACGCTCCCTACCCTCTCTGGGTGCGGACATGTTTT GATGGGATCCGGATGGAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MAPANVLPNTPPSPTDGGGTALDYSSPRYRQAYSRINGIVIEGEQEAHDNYLKLAEMLPEAAEELRKLAKMELRHMKGFQ ACGKNLQVEPDVEFARAFFAPLRDNFQSAAAAGDLVSCFVIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKDEYLHL NFGERWLGEHFAEVKAQIEAANAQNLPLVRQMLQQVEADVEAIYMDREAIVEDFMIAYGEALASIGFNTREVMRLSAQGL RAA
Sequences:
>Translated_243_residues MAPANVLPNTPPSPTDGGGTALDYSSPRYRQAYSRINGIVIEGEQEAHDNYLKLAEMLPEAAEELRKLAKMELRHMKGFQ ACGKNLQVEPDVEFARAFFAPLRDNFQSAAAAGDLVSCFVIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKDEYLHL NFGERWLGEHFAEVKAQIEAANAQNLPLVRQMLQQVEADVEAIYMDREAIVEDFMIAYGEALASIGFNTREVMRLSAQGL RAA >Mature_242_residues APANVLPNTPPSPTDGGGTALDYSSPRYRQAYSRINGIVIEGEQEAHDNYLKLAEMLPEAAEELRKLAKMELRHMKGFQA CGKNLQVEPDVEFARAFFAPLRDNFQSAAAAGDLVSCFVIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKDEYLHLN FGERWLGEHFAEVKAQIEAANAQNLPLVRQMLQQVEADVEAIYMDREAIVEDFMIAYGEALASIGFNTREVMRLSAQGLR AA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26978; Mature: 26847
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPANVLPNTPPSPTDGGGTALDYSSPRYRQAYSRINGIVIEGEQEAHDNYLKLAEMLPE CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHH AAEELRKLAKMELRHMKGFQACGKNLQVEPDVEFARAFFAPLRDNFQSAAAAGDLVSCFV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQSLIIECFAIAAYNIYIPVADDFARKITEGVVKDEYLHLNFGERWLGEHFAEVKAQIEA HHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHH ANAQNLPLVRQMLQQVEADVEAIYMDREAIVEDFMIAYGEALASIGFNTREVMRLSAQGL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC RAA CCC >Mature Secondary Structure APANVLPNTPPSPTDGGGTALDYSSPRYRQAYSRINGIVIEGEQEAHDNYLKLAEMLPE CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHH AAEELRKLAKMELRHMKGFQACGKNLQVEPDVEFARAFFAPLRDNFQSAAAAGDLVSCFV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQSLIIECFAIAAYNIYIPVADDFARKITEGVVKDEYLHLNFGERWLGEHFAEVKAQIEA HHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHH ANAQNLPLVRQMLQQVEADVEAIYMDREAIVEDFMIAYGEALASIGFNTREVMRLSAQGL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC RAA CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA