Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 86605065

GI number: 86605065

Start: 362789

End: 364069

Strand: Reverse

Name: ydcM [C]

Synonym: CYA_0345

Alternate gene names: 86605065

Gene position: 364069-362789 (Counterclockwise)

Preceding gene: 86605066

Following gene: 86605059

Centisome position: 12.41

GC content: 55.66

Gene sequence:

>1281_bases
ATGACGATCACCTTTCTCCCCAACAGGAACTGGTTGAGGATATCCTCACCATCCTGCACTGCTTCAGCAGTCGGCTCTAC
GGACTCAGAAAATACCGGGCTGCAATCGAGAAAGATACGGATTTATCCGGAGCCAGCGCTGGCTAAAGTTTGGAAGCGGT
GGCAAGCGGCGTGCCGGTACTGCTACAACCAAGCGATTGCCTATCAGCGCCAGCATGGTGCCCCAAAAACGGCCAGAAAG
CTGCGGGACATCATCCTGCGCTCCGACCTGCCCGGGTGGGTGAAGGACGTCCCTTGCCACATCAAGCAGAACGCGGTCGT
CGAGGCGTGGTTGGCGTTCCGCCGAAGCAAAGACGCGAGGTTTCGCAGTGTGCGGGACAGGTCGCATACGCTGCAATTCA
ACGCCGGCAACTTTCGCAATGGGACGTGGTATCCGAAACTCACCCGAGGTTTGGCGTTCCGTGCATCCGAGGAGATGCCC
AGAGAATGGGCACGCGGAACTGAGCTAATGCGGGTGAAAGACAGATGGTATGCCATCTTTCCTGAGCCCGTGAACGAGCA
GTGTTCGTTAGCAAAGGGGGTGATCGCACTTGATCCTGGAGTAAGAAGCTTCCTTACAGGGTTTGATGGGGCGGGCTTTG
TAGATATCGCCAAGGGGGACTTTGGCAGGATCGTTCGGCTGTGCTACCACCTAGACGATCTGCAATCTAGGCTGAGTAAA
GCACCGAGATCCAAGCGTAGGCGAATGCGGCAAGCGGCGTTTCGTCTGCGGGAGAGAATCAGGAACTTGGTGGACGAGTG
CCATCGCAAGGTAGCGGCGTTCCTAACGGATAACTACCGATTGATATTCCTCCCCACTTTCGAGTCAGCCAAGATGGTTG
CCAAGGCAGGGAGGAAGTTTGGTAGCAAGACAGCAAGGGCGATGCTCACCTGGGCGCACTACCGGTTCAAGCAGTTCCTG
AAGTTTCAAGCCAAGAAGAAAAACGTGGTTGTCGTGGAAGTATCGGAAGCGTACACCAGCAAAACCTGTACCAAGTGCGG
GCACATCCACACTAAGTTGGGTGGCGCAAAGGTGTTTCGATGCCCAAAGTGCAACCATAGGCTACCACGAGATTGGCAAG
GCGCTCTGGGCGTTATGCTCAGGGCTTTGCGGGATACCGCCTTTCTGTTTGGACTCCGTCCCGCTAACGCGGTCGCGTCA
GCATCGCGTAGTAACAACGGAAACGGACAGAATGCTATCGCTTCACCGCTGAGCAGTAATGCTCAGCAGTGTTCAGCGTA
A

Upstream 100 bases:

>100_bases
GGAACGATTGTGGTCGCTCACCGGGATCGACTCTGCCGGTTTGGATTTGAGTTCGTTGAGTGGTACTGCCGTCAATACGG
GTGCGAAATCTTGGTTCTCG

Downstream 100 bases:

>100_bases
ATGTATCAGTACCGGGCAGACTCGCAGCAAGGCGACCAAGGCTCAGCGCTGTTCTACGACGGGAAGCTAGTTTACCTGTC
AGCAGTAGGGCCAGTCGTTT

Product: ISSoc2, transposase

Products: NA

Alternate protein names: ISSoc2 Transposase

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MTITFLPNRNWLRISSPSCTASAVGSTDSENTGLQSRKIRIYPEPALAKVWKRWQAACRYCYNQAIAYQRQHGAPKTARK
LRDIILRSDLPGWVKDVPCHIKQNAVVEAWLAFRRSKDARFRSVRDRSHTLQFNAGNFRNGTWYPKLTRGLAFRASEEMP
REWARGTELMRVKDRWYAIFPEPVNEQCSLAKGVIALDPGVRSFLTGFDGAGFVDIAKGDFGRIVRLCYHLDDLQSRLSK
APRSKRRRMRQAAFRLRERIRNLVDECHRKVAAFLTDNYRLIFLPTFESAKMVAKAGRKFGSKTARAMLTWAHYRFKQFL
KFQAKKKNVVVVEVSEAYTSKTCTKCGHIHTKLGGAKVFRCPKCNHRLPRDWQGALGVMLRALRDTAFLFGLRPANAVAS
ASRSNNGNGQNAIASPLSSNAQQCSA

Sequences:

>Translated_426_residues
MTITFLPNRNWLRISSPSCTASAVGSTDSENTGLQSRKIRIYPEPALAKVWKRWQAACRYCYNQAIAYQRQHGAPKTARK
LRDIILRSDLPGWVKDVPCHIKQNAVVEAWLAFRRSKDARFRSVRDRSHTLQFNAGNFRNGTWYPKLTRGLAFRASEEMP
REWARGTELMRVKDRWYAIFPEPVNEQCSLAKGVIALDPGVRSFLTGFDGAGFVDIAKGDFGRIVRLCYHLDDLQSRLSK
APRSKRRRMRQAAFRLRERIRNLVDECHRKVAAFLTDNYRLIFLPTFESAKMVAKAGRKFGSKTARAMLTWAHYRFKQFL
KFQAKKKNVVVVEVSEAYTSKTCTKCGHIHTKLGGAKVFRCPKCNHRLPRDWQGALGVMLRALRDTAFLFGLRPANAVAS
ASRSNNGNGQNAIASPLSSNAQQCSA
>Mature_425_residues
TITFLPNRNWLRISSPSCTASAVGSTDSENTGLQSRKIRIYPEPALAKVWKRWQAACRYCYNQAIAYQRQHGAPKTARKL
RDIILRSDLPGWVKDVPCHIKQNAVVEAWLAFRRSKDARFRSVRDRSHTLQFNAGNFRNGTWYPKLTRGLAFRASEEMPR
EWARGTELMRVKDRWYAIFPEPVNEQCSLAKGVIALDPGVRSFLTGFDGAGFVDIAKGDFGRIVRLCYHLDDLQSRLSKA
PRSKRRRMRQAAFRLRERIRNLVDECHRKVAAFLTDNYRLIFLPTFESAKMVAKAGRKFGSKTARAMLTWAHYRFKQFLK
FQAKKKNVVVVEVSEAYTSKTCTKCGHIHTKLGGAKVFRCPKCNHRLPRDWQGALGVMLRALRDTAFLFGLRPANAVASA
SRSNNGNGQNAIASPLSSNAQQCSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48420; Mature: 48289

Theoretical pI: Translated: 11.24; Mature: 11.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITFLPNRNWLRISSPSCTASAVGSTDSENTGLQSRKIRIYPEPALAKVWKRWQAACRY
CEEEEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
CYNQAIAYQRQHGAPKTARKLRDIILRSDLPGWVKDVPCHIKQNAVVEAWLAFRRSKDAR
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
FRSVRDRSHTLQFNAGNFRNGTWYPKLTRGLAFRASEEMPREWARGTELMRVKDRWYAIF
HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCEEEEC
PEPVNEQCSLAKGVIALDPGVRSFLTGFDGAGFVDIAKGDFGRIVRLCYHLDDLQSRLSK
CCCCCCHHHHHCCEEEECCCHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
APRSKRRRMRQAAFRLRERIRNLVDECHRKVAAFLTDNYRLIFLPTFESAKMVAKAGRKF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHH
GSKTARAMLTWAHYRFKQFLKFQAKKKNVVVVEVSEAYTSKTCTKCGHIHTKLGGAKVFR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCHHHHCCCCEEEE
CPKCNHRLPRDWQGALGVMLRALRDTAFLFGLRPANAVASASRSNNGNGQNAIASPLSSN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHCCCCCCCCCCHHHHCCHHCC
AQQCSA
HHHCCC
>Mature Secondary Structure 
TITFLPNRNWLRISSPSCTASAVGSTDSENTGLQSRKIRIYPEPALAKVWKRWQAACRY
EEEEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
CYNQAIAYQRQHGAPKTARKLRDIILRSDLPGWVKDVPCHIKQNAVVEAWLAFRRSKDAR
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
FRSVRDRSHTLQFNAGNFRNGTWYPKLTRGLAFRASEEMPREWARGTELMRVKDRWYAIF
HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCEEEEC
PEPVNEQCSLAKGVIALDPGVRSFLTGFDGAGFVDIAKGDFGRIVRLCYHLDDLQSRLSK
CCCCCCHHHHHCCEEEECCCHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
APRSKRRRMRQAAFRLRERIRNLVDECHRKVAAFLTDNYRLIFLPTFESAKMVAKAGRKF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHH
GSKTARAMLTWAHYRFKQFLKFQAKKKNVVVVEVSEAYTSKTCTKCGHIHTKLGGAKVFR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCHHHHCCCCEEEE
CPKCNHRLPRDWQGALGVMLRALRDTAFLFGLRPANAVASASRSNNGNGQNAIASPLSSN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHCCCCCCCCCCHHHHCCHHCC
AQQCSA
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA