| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605029
Identifier: 86605029
GI number: 86605029
Start: 313288
End: 315018
Strand: Reverse
Name: 86605029
Synonym: CYA_0308
Alternate gene names: NA
Gene position: 315018-313288 (Counterclockwise)
Preceding gene: 86605036
Following gene: 86605027
Centisome position: 10.74
GC content: 64.88
Gene sequence:
>1731_bases GTGGATGTGGGTATGGGACAACGGCAACTCTTGCGCGGGATCCTGATCGGTCTGGGCCTTCTGGCTGCCCTGGTGGTGTG GGCTATCACCTGGCTGCTCACCCAAAGCCCTCTGGCTTTGTTGCTATCTCGCCCGGCGCTGCCGCCGATTGTGGGCCTAG CTCCCCGTTCCACCCAGGCGCTGTTGCTGCTGGCCGCCCCTCTCGAGGATTTGCAGGCATTTTGGCAAGCGGCAACCCCC GCTTCCCAGCGACGCGCCACTCGTCAGCAGTGGCGGAAGTTTTTCTCCGGCGCAGGCCCGGGCTGGTTGGGAGCCATGCT GGCCGGGGGAGCCCTGGATTTCGAGCGGGAGGTGCAGCCCTGGCTGGGGAAAAGCACCCTCTTGGCCAGCTTGCCGGAGT GGGGCACCTTGGTTGCCTTGGAAACTCGCGACGCGGCGCTTGCCCAATTCGAGCTGAACCTGTTGTGGGAGCGGCAGAGC TTGGCCGGCTTGCCAGTGCAGGTGGATACCTACAAGGGCATTCAGGTGGTGTCCAGCCCGCTTCCGGAGTTGCAGGGGTT CACGGCAGCCCTTTTCGGCGAGCGCTATGTGCTGCTGGCAGAACAGGCTGCTGCCATTCGCGCCGCCATCGATGCGTGGC AGTTGCCGCAGTTGTCGTTGGTGAGCAAGCCGCAGTTTCGGCAGGTGATCCAGCCGCTACAGGAGGCGCATGTGGGTTGG GCTTTCTGGCAAAATCCGGAATCGCCCTCTCCCGACGCTCTGGCGTTGCAGGCAGTGGGGCTGGGGCTAGGGGTCAACTT TCGGGGGTTGGTGGCCGAAACTGCCGCCCTTTGGCATACGCCTGCTGAGTTCGCTTTGCCGACGGTAGAAGCTTTTCATC CGCAGGTTATTCGGCATCTGCCCGACGAGACGCTAGCGCTAATTTCCGGACAGAACTGGGCCAACCTTTGGCAGAGCTTG GGGCGGATGCAACCCCTGAGCCTCTTCGGCCTGCGGCTGGATCCCGGCCAATGGCTGCAGCAGTTGCAATTGCAGGTGGA GCTGGACTGGCAGCACTTGTTGCCGGAAAGGGGAGAGTTTGCCCTTGCCTTTTTGCCCACGGATGGGGAACTGGCCTGGC TGTGGGTTGGCAAGAGGCCGGATGCGCCAACGCTGGATGAGCGGGCAATCGCCCAGGGCTGGCAGGTGGTGTCGATTGCA ACTAAGCATGGCACCGCCACTGTCTGGAGCAAGCCGGCGGCCCAGCCGCAACCCCAGCCAAGCCACTCCACGCCGCGAGA AGACATCCCCCTCTTGGCCGGTGGGCTGCTGCAGGTCAGCGGCAGGGGAGGCTCTCCCCGGGTGCAGGCGGCAGAGGCTC TTCCCCAAGCCCTGCCCGCCATCCCGGAAGCATCGCCTCTCTCGGCCCAGGTGTACCACACCGACCGGGAAGGCTACTCC TACCTGGCTTCTTCTTTGGCGGCTTTGGAAGCGGCCCTGGCGGATCCTCCCTTGAGCGCCAGCCGCGCCTGGCGCCGCCT GGTGGCCCCCCTGCCCCACCGCAACCTGGGCTATGGGTACGGATCCCTGGGGGTTCTACCGGAAACTTGGCTGCCCCAAC TGCAGGGATCCCGCTGGTCGTCCACGCGCCTGGCCTTCGCCACCACTGCCCTGACGCTGTCCGAGGCTCCCTATCCGGAT CGGGGGCACTGGCTCCTCCAGAGGGGCAAGCTATTTTGGCAGTGGTACTGA
Upstream 100 bases:
>100_bases GCCAAAGGCAAGCAAGGCGCGCAAACTTCCCCTCGCAGGTAAGATGGTTACGCCGTGCCGAGGTACTGGCATCGAGGCAA GACGGCGCGTCTTTCAGGCT
Downstream 100 bases:
>100_bases GTGGAGCCCGTCAAACTATCCAGGGATCCCGGCAGCCGGGGTGAATGTACTTGCCCAAGTAGAGCTGGTTGCCCGTCTCG TTCCACTGCACAAAGTCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 576; Mature: 576
Protein sequence:
>576_residues MDVGMGQRQLLRGILIGLGLLAALVVWAITWLLTQSPLALLLSRPALPPIVGLAPRSTQALLLLAAPLEDLQAFWQAATP ASQRRATRQQWRKFFSGAGPGWLGAMLAGGALDFEREVQPWLGKSTLLASLPEWGTLVALETRDAALAQFELNLLWERQS LAGLPVQVDTYKGIQVVSSPLPELQGFTAALFGERYVLLAEQAAAIRAAIDAWQLPQLSLVSKPQFRQVIQPLQEAHVGW AFWQNPESPSPDALALQAVGLGLGVNFRGLVAETAALWHTPAEFALPTVEAFHPQVIRHLPDETLALISGQNWANLWQSL GRMQPLSLFGLRLDPGQWLQQLQLQVELDWQHLLPERGEFALAFLPTDGELAWLWVGKRPDAPTLDERAIAQGWQVVSIA TKHGTATVWSKPAAQPQPQPSHSTPREDIPLLAGGLLQVSGRGGSPRVQAAEALPQALPAIPEASPLSAQVYHTDREGYS YLASSLAALEAALADPPLSASRAWRRLVAPLPHRNLGYGYGSLGVLPETWLPQLQGSRWSSTRLAFATTALTLSEAPYPD RGHWLLQRGKLFWQWY
Sequences:
>Translated_576_residues MDVGMGQRQLLRGILIGLGLLAALVVWAITWLLTQSPLALLLSRPALPPIVGLAPRSTQALLLLAAPLEDLQAFWQAATP ASQRRATRQQWRKFFSGAGPGWLGAMLAGGALDFEREVQPWLGKSTLLASLPEWGTLVALETRDAALAQFELNLLWERQS LAGLPVQVDTYKGIQVVSSPLPELQGFTAALFGERYVLLAEQAAAIRAAIDAWQLPQLSLVSKPQFRQVIQPLQEAHVGW AFWQNPESPSPDALALQAVGLGLGVNFRGLVAETAALWHTPAEFALPTVEAFHPQVIRHLPDETLALISGQNWANLWQSL GRMQPLSLFGLRLDPGQWLQQLQLQVELDWQHLLPERGEFALAFLPTDGELAWLWVGKRPDAPTLDERAIAQGWQVVSIA TKHGTATVWSKPAAQPQPQPSHSTPREDIPLLAGGLLQVSGRGGSPRVQAAEALPQALPAIPEASPLSAQVYHTDREGYS YLASSLAALEAALADPPLSASRAWRRLVAPLPHRNLGYGYGSLGVLPETWLPQLQGSRWSSTRLAFATTALTLSEAPYPD RGHWLLQRGKLFWQWY >Mature_576_residues MDVGMGQRQLLRGILIGLGLLAALVVWAITWLLTQSPLALLLSRPALPPIVGLAPRSTQALLLLAAPLEDLQAFWQAATP ASQRRATRQQWRKFFSGAGPGWLGAMLAGGALDFEREVQPWLGKSTLLASLPEWGTLVALETRDAALAQFELNLLWERQS LAGLPVQVDTYKGIQVVSSPLPELQGFTAALFGERYVLLAEQAAAIRAAIDAWQLPQLSLVSKPQFRQVIQPLQEAHVGW AFWQNPESPSPDALALQAVGLGLGVNFRGLVAETAALWHTPAEFALPTVEAFHPQVIRHLPDETLALISGQNWANLWQSL GRMQPLSLFGLRLDPGQWLQQLQLQVELDWQHLLPERGEFALAFLPTDGELAWLWVGKRPDAPTLDERAIAQGWQVVSIA TKHGTATVWSKPAAQPQPQPSHSTPREDIPLLAGGLLQVSGRGGSPRVQAAEALPQALPAIPEASPLSAQVYHTDREGYS YLASSLAALEAALADPPLSASRAWRRLVAPLPHRNLGYGYGSLGVLPETWLPQLQGSRWSSTRLAFATTALTLSEAPYPD RGHWLLQRGKLFWQWY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62999; Mature: 62999
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVGMGQRQLLRGILIGLGLLAALVVWAITWLLTQSPLALLLSRPALPPIVGLAPRSTQA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEECCCCCCCCE LLLLAAPLEDLQAFWQAATPASQRRATRQQWRKFFSGAGPGWLGAMLAGGALDFEREVQP EEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH WLGKSTLLASLPEWGTLVALETRDAALAQFELNLLWERQSLAGLPVQVDTYKGIQVVSSP HCCCHHHHHCCCCCCEEEEEECCCCHHHEEHHHHEEEHHHHCCCCEEEECCCCHHHHHCC LPELQGFTAALFGERYVLLAEQAAAIRAAIDAWQLPQLSLVSKPQFRQVIQPLQEAHVGW CHHHHCCHHHHHCCEEEEEHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCE AFWQNPESPSPDALALQAVGLGLGVNFRGLVAETAALWHTPAEFALPTVEAFHPQVIRHL EEECCCCCCCCCCEEHEEHHCCCCCCCHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHC PDETLALISGQNWANLWQSLGRMQPLSLFGLRLDPGQWLQQLQLQVELDWQHLLPERGEF CCCCEEEECCCCHHHHHHHHCCCCCCHHEEEEECHHHHHHHHHEEEEECHHHCCCCCCCE ALAFLPTDGELAWLWVGKRPDAPTLDERAIAQGWQVVSIATKHGTATVWSKPAAQPQPQP EEEEECCCCCEEEEEECCCCCCCCCHHHHHHCCCEEEEEEECCCCEEEECCCCCCCCCCC SHSTPREDIPLLAGGLLQVSGRGGSPRVQAAEALPQALPAIPEASPLSAQVYHTDREGYS CCCCCCCCCCHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHH YLASSLAALEAALADPPLSASRAWRRLVAPLPHRNLGYGYGSLGVLPETWLPQLQGSRWS HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC STRLAFATTALTLSEAPYPDRGHWLLQRGKLFWQWY CCEEEEEEEEEEECCCCCCCCCCCCEECCCEEEEEC >Mature Secondary Structure MDVGMGQRQLLRGILIGLGLLAALVVWAITWLLTQSPLALLLSRPALPPIVGLAPRSTQA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEECCCCCCCCE LLLLAAPLEDLQAFWQAATPASQRRATRQQWRKFFSGAGPGWLGAMLAGGALDFEREVQP EEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH WLGKSTLLASLPEWGTLVALETRDAALAQFELNLLWERQSLAGLPVQVDTYKGIQVVSSP HCCCHHHHHCCCCCCEEEEEECCCCHHHEEHHHHEEEHHHHCCCCEEEECCCCHHHHHCC LPELQGFTAALFGERYVLLAEQAAAIRAAIDAWQLPQLSLVSKPQFRQVIQPLQEAHVGW CHHHHCCHHHHHCCEEEEEHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCE AFWQNPESPSPDALALQAVGLGLGVNFRGLVAETAALWHTPAEFALPTVEAFHPQVIRHL EEECCCCCCCCCCEEHEEHHCCCCCCCHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHC PDETLALISGQNWANLWQSLGRMQPLSLFGLRLDPGQWLQQLQLQVELDWQHLLPERGEF CCCCEEEECCCCHHHHHHHHCCCCCCHHEEEEECHHHHHHHHHEEEEECHHHCCCCCCCE ALAFLPTDGELAWLWVGKRPDAPTLDERAIAQGWQVVSIATKHGTATVWSKPAAQPQPQP EEEEECCCCCEEEEEECCCCCCCCCHHHHHHCCCEEEEEEECCCCEEEECCCCCCCCCCC SHSTPREDIPLLAGGLLQVSGRGGSPRVQAAEALPQALPAIPEASPLSAQVYHTDREGYS CCCCCCCCCCHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHH YLASSLAALEAALADPPLSASRAWRRLVAPLPHRNLGYGYGSLGVLPETWLPQLQGSRWS HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC STRLAFATTALTLSEAPYPDRGHWLLQRGKLFWQWY CCEEEEEEEEEEECCCCCCCCCCCCEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA