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The map label for this gene is hup-1

Identifier: 86605026

GI number: 86605026

Start: 312014

End: 312340

Strand: Reverse

Name: hup-1

Synonym: CYA_0305

Alternate gene names: 86605026

Gene position: 312340-312014 (Counterclockwise)

Preceding gene: 86605027

Following gene: 86605025

Centisome position: 10.65

GC content: 63.61

Gene sequence:

>327_bases
GTGGCTTCTCCCCATCTAAATCGCCGTTTGTTGGCCCGCCAGATGGCTGCGCAAGTGGATGGCCTGACCGTCAAAATGGC
TGCCGCTGCCCTAGAGGCCATGCTAGACAGCATCAGCCAATGTCTGGCGGAAGGAGGATCCGTGCGGCTGGCGCGCTTTG
GCACCTTCTTGCTGCGGCCCCGTCCGGCCCGGCAAACCTATCACCCCCGCACTAAGGCTCCTGTCCACATCCCGGCTGCC
CAAGTGCCCTATTTTGTCCCCAGCCCGGAGCTGGGACACCCTAGGAGAGAACGCCGAGGGGATCTGGAAGCGCCGCCATC
CGTCTAG

Upstream 100 bases:

>100_bases
AGCAGGCTTCCCCATGCTGGTGTTTCGGCTTGGTAGCCAGCTTCGGCGCCGTTGTAGAGCTAGGGAAGCTTATAATATCT
TGCCGTTTTGGGAGGTGGCT

Downstream 100 bases:

>100_bases
AATGGCTGTTCTGCTTTGGTTTCGCACCGATTTGCGCCTGCTGGATCACCAGCCGCTGACGCGGGCTTGCCAGCAGGGAT
CCTTCCTCATTCCCCTCTAC

Product: DNA-binding protein HU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MASPHLNRRLLARQMAAQVDGLTVKMAAAALEAMLDSISQCLAEGGSVRLARFGTFLLRPRPARQTYHPRTKAPVHIPAA
QVPYFVPSPELGHPRRERRGDLEAPPSV

Sequences:

>Translated_108_residues
MASPHLNRRLLARQMAAQVDGLTVKMAAAALEAMLDSISQCLAEGGSVRLARFGTFLLRPRPARQTYHPRTKAPVHIPAA
QVPYFVPSPELGHPRRERRGDLEAPPSV
>Mature_107_residues
ASPHLNRRLLARQMAAQVDGLTVKMAAAALEAMLDSISQCLAEGGSVRLARFGTFLLRPRPARQTYHPRTKAPVHIPAAQ
VPYFVPSPELGHPRRERRGDLEAPPSV

Specific function: Histone-Like DNA-Binding Protein Which Is Capable Of Wrapping DNA To Stabilize It, And Thus To Prevent Its Denaturation Under Extreme Environmental Conditions. [C]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11845; Mature: 11714

Theoretical pI: Translated: 11.57; Mature: 11.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASPHLNRRLLARQMAAQVDGLTVKMAAAALEAMLDSISQCLAEGGSVRLARFGTFLLRP
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCC
RPARQTYHPRTKAPVHIPAAQVPYFVPSPELGHPRRERRGDLEAPPSV
CCCCCCCCCCCCCCEECCCCCCCEECCCCCCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure 
ASPHLNRRLLARQMAAQVDGLTVKMAAAALEAMLDSISQCLAEGGSVRLARFGTFLLRP
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCC
RPARQTYHPRTKAPVHIPAAQVPYFVPSPELGHPRRERRGDLEAPPSV
CCCCCCCCCCCCCCEECCCCCCCEECCCCCCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA