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The map label for this gene is yjfH [C]

Identifier: 86605012

GI number: 86605012

Start: 297419

End: 298483

Strand: Reverse

Name: yjfH [C]

Synonym: CYA_0291

Alternate gene names: 86605012

Gene position: 298483-297419 (Counterclockwise)

Preceding gene: 86605013

Following gene: 86605011

Centisome position: 10.18

GC content: 62.91

Gene sequence:

>1065_bases
ATGCCCAAGCCTTCCCAATGCAAACCTCCCTTACGGCTGTCTCGCCGGAGCAAGCTGCAGCGGCAAGGGGCGGGGCAACC
CTTCAACAAGCCCAAGCAGACCAAACGGCGCGAGGGGGGCTCCCCGCTCCATCTCCAGCCGGCGGCGCAAGAGCCGCCCG
TAAAGCCGCTTCGTCGCAAGGCTGAGCAGGAGCGCCCCCAGCCAAATCCCAGCCCTCCCGTTGCCAGTCCAGAAGACGGG
GAGCTGCAGGTTAACCGGGATCCCGAAGCCGAACCTGAACAAGAGATCATCTACGGTCGCCAAACCGTGTTGGCTGCGCT
GAGAAGCCAGGCCACCCTTAACCGAGTGTGGGTGCTGCCGCGGTTGCGCTACAGCCCCCAATTTTGGTCTTTGTTGGAAG
AAGCCAAAGCACGGGGTACCGTCATCGATGAGGTGTCTCTCCAGCGGCTAAACCTTCTCACCGCTGGAGCCAACCACCAG
GGGATCGCCGCCCAGGCCACCCCTTACCGCTATGTGGATCTGGAAGAGCTGGTGGAACAGAGCCGCCAGTCCGGCCCCCA
TCCGGTGCTGGTGGTGCTGGACGGGATCCAGGATCCCCACAACCTGGGGGCTATTGCCCGCAGCGTGGAGGCGTTTGGCA
TGCAGGGGATGGTGATCCCACAGCGGCGGGCGGCAGGCGTCACTGCGACGGTGATGAAGGTGGCAGCGGGGGCCCTCTCT
ACTTTGCCGGTGGCGCGGGTGGTGAACTTAAATCGCGCCCTGGAATATCTTAAAGGGCAGGGGTTTTGGGTCTATGGCAC
CACCAGCCAGGGGGCTGCCCCTATCTACAGCGCCGACTTTCGCCGACCTATTGCCTTGGTGGTGGGATCCGAAGGGGAAG
GCATCAGCTTGCTCACCCAGCGCCACTGCGACCAACTGCTGTCGATCCCCTTGGCGGGCCGCACGGAAAGTTTGAATGCT
TCGGTGGCGGCGGGCATCGCCCTCTACGAGATCCACCGGCAGCGCTCCCCCCACCGAGGTCGAAACATTTCTCAACAAAT
CCTCAACGAAGGCAGTAGAATCTAG

Upstream 100 bases:

>100_bases
AGCGGCTACGCCACATTCTCGCTCTCACCGATGTTTTGGCCAAGACGATAGGCGAGGGGGAAGGTTAAGATCGGCTTTTA
CTCTGCACCGTTCTCTGCCC

Downstream 100 bases:

>100_bases
GTGATTGCAAAAGATCCTGAGTCATCCTTTGCGCTTAATAGGGGGGATGGATCCCGTGGGCAACCCTTTGGTCTGGCTGT
TGGATAGGCTGCGGGGCCTA

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MPKPSQCKPPLRLSRRSKLQRQGAGQPFNKPKQTKRREGGSPLHLQPAAQEPPVKPLRRKAEQERPQPNPSPPVASPEDG
ELQVNRDPEAEPEQEIIYGRQTVLAALRSQATLNRVWVLPRLRYSPQFWSLLEEAKARGTVIDEVSLQRLNLLTAGANHQ
GIAAQATPYRYVDLEELVEQSRQSGPHPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGALS
TLPVARVVNLNRALEYLKGQGFWVYGTTSQGAAPIYSADFRRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNA
SVAAGIALYEIHRQRSPHRGRNISQQILNEGSRI

Sequences:

>Translated_354_residues
MPKPSQCKPPLRLSRRSKLQRQGAGQPFNKPKQTKRREGGSPLHLQPAAQEPPVKPLRRKAEQERPQPNPSPPVASPEDG
ELQVNRDPEAEPEQEIIYGRQTVLAALRSQATLNRVWVLPRLRYSPQFWSLLEEAKARGTVIDEVSLQRLNLLTAGANHQ
GIAAQATPYRYVDLEELVEQSRQSGPHPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGALS
TLPVARVVNLNRALEYLKGQGFWVYGTTSQGAAPIYSADFRRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNA
SVAAGIALYEIHRQRSPHRGRNISQQILNEGSRI
>Mature_353_residues
PKPSQCKPPLRLSRRSKLQRQGAGQPFNKPKQTKRREGGSPLHLQPAAQEPPVKPLRRKAEQERPQPNPSPPVASPEDGE
LQVNRDPEAEPEQEIIYGRQTVLAALRSQATLNRVWVLPRLRYSPQFWSLLEEAKARGTVIDEVSLQRLNLLTAGANHQG
IAAQATPYRYVDLEELVEQSRQSGPHPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGALST
LPVARVVNLNRALEYLKGQGFWVYGTTSQGAAPIYSADFRRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNAS
VAAGIALYEIHRQRSPHRGRNISQQILNEGSRI

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=220, Percent_Identity=35, Blast_Score=106, Evalue=3e-23,
Organism=Escherichia coli, GI1790623, Length=246, Percent_Identity=40.650406504065, Blast_Score=177, Evalue=9e-46,
Organism=Escherichia coli, GI1790083, Length=172, Percent_Identity=33.1395348837209, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788935, Length=323, Percent_Identity=23.8390092879257, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17555908, Length=265, Percent_Identity=29.811320754717, Blast_Score=97, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6324775, Length=294, Percent_Identity=27.5510204081633, Blast_Score=89, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 38839; Mature: 38708

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKPSQCKPPLRLSRRSKLQRQGAGQPFNKPKQTKRREGGSPLHLQPAAQEPPVKPLRRK
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHH
AEQERPQPNPSPPVASPEDGELQVNRDPEAEPEQEIIYGRQTVLAALRSQATLNRVWVLP
HHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECC
RLRYSPQFWSLLEEAKARGTVIDEVSLQRLNLLTAGANHQGIAAQATPYRYVDLEELVEQ
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCEECCCCCEECCHHHHHHH
SRQSGPHPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGALS
HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHCCHHHHHHHHHHHHHH
TLPVARVVNLNRALEYLKGQGFWVYGTTSQGAAPIYSADFRRPIALVVGSEGEGISLLTQ
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHCCCCCEEEEECCCCCCHHHHHH
RHCDQLLSIPLAGRTESLNASVAAGIALYEIHRQRSPHRGRNISQQILNEGSRI
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure 
PKPSQCKPPLRLSRRSKLQRQGAGQPFNKPKQTKRREGGSPLHLQPAAQEPPVKPLRRK
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHH
AEQERPQPNPSPPVASPEDGELQVNRDPEAEPEQEIIYGRQTVLAALRSQATLNRVWVLP
HHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECC
RLRYSPQFWSLLEEAKARGTVIDEVSLQRLNLLTAGANHQGIAAQATPYRYVDLEELVEQ
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCEECCCCCEECCHHHHHHH
SRQSGPHPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGALS
HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHCCHHHHHHHHHHHHHH
TLPVARVVNLNRALEYLKGQGFWVYGTTSQGAAPIYSADFRRPIALVVGSEGEGISLLTQ
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHCCCCCEEEEECCCCCCHHHHHH
RHCDQLLSIPLAGRTESLNASVAAGIALYEIHRQRSPHRGRNISQQILNEGSRI
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]